Hb_016734_020

Information

Type -
Description -
Location Contig16734: 13147-21983
Sequence    

Annotation

kegg
ID rcu:RCOM_0535550
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002521558.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q9FRL3
description Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1
trembl
ID B9S6D9
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_0535550 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter erd6-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15459: 13257-13884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_020 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_010872_050 0.0695738189 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
3 Hb_008206_080 0.0845544578 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
4 Hb_004096_110 0.0874335165 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
5 Hb_002596_060 0.0884401672 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000979_220 0.092196776 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
7 Hb_027760_060 0.0933348464 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
8 Hb_000029_170 0.0943476034 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
9 Hb_080147_050 0.0981615941 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
10 Hb_007185_040 0.0984512339 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
11 Hb_000229_050 0.0985390344 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
12 Hb_005074_020 0.0988795603 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
13 Hb_003636_080 0.0990785144 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
14 Hb_019840_030 0.0993850662 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
15 Hb_000101_390 0.09960424 - - PREDICTED: mucin-5B [Jatropha curcas]
16 Hb_021576_010 0.1013440445 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
17 Hb_000297_030 0.1021469054 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
18 Hb_000787_200 0.1024173901 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_027506_010 0.102418182 - - PREDICTED: cullin-4 [Jatropha curcas]
20 Hb_005846_050 0.1028407485 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]

Gene co-expression network

sample Hb_016734_020 Hb_016734_020 Hb_010872_050 Hb_010872_050 Hb_016734_020--Hb_010872_050 Hb_008206_080 Hb_008206_080 Hb_016734_020--Hb_008206_080 Hb_004096_110 Hb_004096_110 Hb_016734_020--Hb_004096_110 Hb_002596_060 Hb_002596_060 Hb_016734_020--Hb_002596_060 Hb_000979_220 Hb_000979_220 Hb_016734_020--Hb_000979_220 Hb_027760_060 Hb_027760_060 Hb_016734_020--Hb_027760_060 Hb_007185_040 Hb_007185_040 Hb_010872_050--Hb_007185_040 Hb_011674_040 Hb_011674_040 Hb_010872_050--Hb_011674_040 Hb_006916_110 Hb_006916_110 Hb_010872_050--Hb_006916_110 Hb_010872_050--Hb_000979_220 Hb_000345_320 Hb_000345_320 Hb_010872_050--Hb_000345_320 Hb_000229_050 Hb_000229_050 Hb_008206_080--Hb_000229_050 Hb_000579_080 Hb_000579_080 Hb_008206_080--Hb_000579_080 Hb_012633_050 Hb_012633_050 Hb_008206_080--Hb_012633_050 Hb_159809_070 Hb_159809_070 Hb_008206_080--Hb_159809_070 Hb_008304_020 Hb_008304_020 Hb_008206_080--Hb_008304_020 Hb_000101_390 Hb_000101_390 Hb_008206_080--Hb_000101_390 Hb_021576_010 Hb_021576_010 Hb_004096_110--Hb_021576_010 Hb_003777_290 Hb_003777_290 Hb_004096_110--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_004096_110--Hb_000327_250 Hb_004096_110--Hb_000979_220 Hb_011883_020 Hb_011883_020 Hb_004096_110--Hb_011883_020 Hb_001269_600 Hb_001269_600 Hb_004096_110--Hb_001269_600 Hb_019840_030 Hb_019840_030 Hb_002596_060--Hb_019840_030 Hb_004837_280 Hb_004837_280 Hb_002596_060--Hb_004837_280 Hb_000122_080 Hb_000122_080 Hb_002596_060--Hb_000122_080 Hb_060980_010 Hb_060980_010 Hb_002596_060--Hb_060980_010 Hb_002259_080 Hb_002259_080 Hb_002596_060--Hb_002259_080 Hb_000161_210 Hb_000161_210 Hb_002596_060--Hb_000161_210 Hb_000979_220--Hb_021576_010 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_000979_220--Hb_003777_290 Hb_027506_010 Hb_027506_010 Hb_000979_220--Hb_027506_010 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_000029_170 Hb_000029_170 Hb_027760_060--Hb_000029_170 Hb_005074_020 Hb_005074_020 Hb_027760_060--Hb_005074_020 Hb_002317_010 Hb_002317_010 Hb_027760_060--Hb_002317_010 Hb_008289_040 Hb_008289_040 Hb_027760_060--Hb_008289_040 Hb_001646_020 Hb_001646_020 Hb_027760_060--Hb_001646_020 Hb_002445_030 Hb_002445_030 Hb_027760_060--Hb_002445_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.810111 1.70089 2.71882 1.82098 1.12548 1.00795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.527074 0.87693 1.13277 3.23441 1.64238

CAGE analysis