Hb_016734_030

Information

Type -
Description -
Location Contig16734: 13305-13552
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_030 0.0 - - -
2 Hb_015978_050 0.2098333166 - - -
3 Hb_016748_010 0.2442590111 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_093824_010 0.2661464243 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]
5 Hb_001188_120 0.2871487635 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
6 Hb_000487_190 0.2879976956 - - -
7 Hb_000111_110 0.2916638744 - - Uncharacterized protein isoform 1 [Theobroma cacao]
8 Hb_000236_450 0.2922268574 - - coated vesicle membrane protein, putative [Ricinus communis]
9 Hb_001153_130 0.2941553031 - - unnamed protein product [Vitis vinifera]
10 Hb_001461_020 0.2958703268 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
11 Hb_000964_070 0.2981332841 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
12 Hb_001496_080 0.3050909882 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_031658_040 0.305716968 - - -
14 Hb_002226_050 0.3065306405 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
15 Hb_085083_020 0.3069076391 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
16 Hb_005505_040 0.308347114 - - -
17 Hb_001408_120 0.3151069551 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_006618_050 0.3159952002 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
19 Hb_032258_010 0.3188948775 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
20 Hb_002631_250 0.3203583727 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]

Gene co-expression network

sample Hb_016734_030 Hb_016734_030 Hb_015978_050 Hb_015978_050 Hb_016734_030--Hb_015978_050 Hb_016748_010 Hb_016748_010 Hb_016734_030--Hb_016748_010 Hb_093824_010 Hb_093824_010 Hb_016734_030--Hb_093824_010 Hb_001188_120 Hb_001188_120 Hb_016734_030--Hb_001188_120 Hb_000487_190 Hb_000487_190 Hb_016734_030--Hb_000487_190 Hb_000111_110 Hb_000111_110 Hb_016734_030--Hb_000111_110 Hb_000236_450 Hb_000236_450 Hb_015978_050--Hb_000236_450 Hb_001496_080 Hb_001496_080 Hb_015978_050--Hb_001496_080 Hb_005511_090 Hb_005511_090 Hb_015978_050--Hb_005511_090 Hb_032258_010 Hb_032258_010 Hb_015978_050--Hb_032258_010 Hb_001341_020 Hb_001341_020 Hb_015978_050--Hb_001341_020 Hb_008326_010 Hb_008326_010 Hb_016748_010--Hb_008326_010 Hb_000120_040 Hb_000120_040 Hb_016748_010--Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_016748_010--Hb_006420_050 Hb_016748_010--Hb_000111_110 Hb_000122_210 Hb_000122_210 Hb_016748_010--Hb_000122_210 Hb_000094_050 Hb_000094_050 Hb_093824_010--Hb_000094_050 Hb_003645_050 Hb_003645_050 Hb_093824_010--Hb_003645_050 Hb_000495_060 Hb_000495_060 Hb_093824_010--Hb_000495_060 Hb_001871_030 Hb_001871_030 Hb_093824_010--Hb_001871_030 Hb_006717_080 Hb_006717_080 Hb_093824_010--Hb_006717_080 Hb_012753_010 Hb_012753_010 Hb_001188_120--Hb_012753_010 Hb_003186_040 Hb_003186_040 Hb_001188_120--Hb_003186_040 Hb_002791_020 Hb_002791_020 Hb_001188_120--Hb_002791_020 Hb_085083_020 Hb_085083_020 Hb_001188_120--Hb_085083_020 Hb_076795_010 Hb_076795_010 Hb_001188_120--Hb_076795_010 Hb_185058_020 Hb_185058_020 Hb_001188_120--Hb_185058_020 Hb_002154_080 Hb_002154_080 Hb_000487_190--Hb_002154_080 Hb_108557_020 Hb_108557_020 Hb_000487_190--Hb_108557_020 Hb_000812_030 Hb_000812_030 Hb_000487_190--Hb_000812_030 Hb_000331_340 Hb_000331_340 Hb_000487_190--Hb_000331_340 Hb_156850_130 Hb_156850_130 Hb_000487_190--Hb_156850_130 Hb_001214_050 Hb_001214_050 Hb_000111_110--Hb_001214_050 Hb_000676_200 Hb_000676_200 Hb_000111_110--Hb_000676_200 Hb_002235_100 Hb_002235_100 Hb_000111_110--Hb_002235_100 Hb_002631_250 Hb_002631_250 Hb_000111_110--Hb_002631_250 Hb_000010_290 Hb_000010_290 Hb_000111_110--Hb_000010_290 Hb_020025_010 Hb_020025_010 Hb_000111_110--Hb_020025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34366 0.964564 0.928036 0 1.19789 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.684093 0.813893 1.93106 4.30541

CAGE analysis