Hb_016734_100

Information

Type -
Description -
Location Contig16734: 82279-83970
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15484: 81958-86495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_100 0.0 - - -
2 Hb_001426_020 0.0276807704 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
3 Hb_000487_080 0.0354493595 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
4 Hb_001642_020 0.0361573677 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
5 Hb_001031_140 0.0457773108 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
6 Hb_007120_120 0.0497865315 - - protein binding protein, putative [Ricinus communis]
7 Hb_009663_020 0.0530609082 - - -
8 Hb_163566_010 0.0574414762 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
9 Hb_001652_100 0.0645684846 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
10 Hb_001141_180 0.0649795034 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
11 Hb_012035_010 0.0725456205 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
12 Hb_001728_070 0.078969467 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
13 Hb_005833_010 0.0805818902 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
14 Hb_024071_030 0.0809758894 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
15 Hb_008147_020 0.081502767 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
16 Hb_000058_180 0.08185852 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
17 Hb_002043_020 0.0823466101 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
18 Hb_001206_110 0.0866367159 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
19 Hb_000321_110 0.0887910211 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
20 Hb_000777_080 0.0902705547 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]

Gene co-expression network

sample Hb_016734_100 Hb_016734_100 Hb_001426_020 Hb_001426_020 Hb_016734_100--Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_016734_100--Hb_000487_080 Hb_001642_020 Hb_001642_020 Hb_016734_100--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_016734_100--Hb_001031_140 Hb_007120_120 Hb_007120_120 Hb_016734_100--Hb_007120_120 Hb_009663_020 Hb_009663_020 Hb_016734_100--Hb_009663_020 Hb_001426_020--Hb_000487_080 Hb_001426_020--Hb_001642_020 Hb_001426_020--Hb_001031_140 Hb_163566_010 Hb_163566_010 Hb_001426_020--Hb_163566_010 Hb_005833_010 Hb_005833_010 Hb_001426_020--Hb_005833_010 Hb_000487_080--Hb_001642_020 Hb_000487_080--Hb_001031_140 Hb_012035_010 Hb_012035_010 Hb_000487_080--Hb_012035_010 Hb_000487_080--Hb_163566_010 Hb_001642_020--Hb_001031_140 Hb_001141_180 Hb_001141_180 Hb_001642_020--Hb_001141_180 Hb_001652_100 Hb_001652_100 Hb_001642_020--Hb_001652_100 Hb_001031_140--Hb_001141_180 Hb_001728_070 Hb_001728_070 Hb_001031_140--Hb_001728_070 Hb_001206_110 Hb_001206_110 Hb_001031_140--Hb_001206_110 Hb_002043_020 Hb_002043_020 Hb_001031_140--Hb_002043_020 Hb_007120_120--Hb_009663_020 Hb_024071_030 Hb_024071_030 Hb_007120_120--Hb_024071_030 Hb_007120_120--Hb_001652_100 Hb_007120_120--Hb_163566_010 Hb_007120_120--Hb_001642_020 Hb_009663_020--Hb_024071_030 Hb_009663_020--Hb_163566_010 Hb_009663_020--Hb_001652_100 Hb_000321_110 Hb_000321_110 Hb_009663_020--Hb_000321_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.322752 0.252544 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.260669

CAGE analysis