Hb_016835_020

Information

Type -
Description -
Location Contig16835: 33579-34846
Sequence    

Annotation

kegg
ID cit:102609085
description probable LRR receptor-like serine/threonine-protein kinase At4g08850-like
nr
ID CDP19279.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A068VFG0
description Coffea canephora DH200=94 genomic scaffold, scaffold_404 OS=Coffea canephora GN=GSCOC_T00005643001 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016835_020 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_005843_060 0.1097189639 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
3 Hb_001369_270 0.114713969 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_110737_010 0.1399027261 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
5 Hb_003030_050 0.1494858985 - - -
6 Hb_029727_010 0.1579283184 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_167457_010 0.163504369 - - hypothetical protein glysoja_045622, partial [Glycine soja]
8 Hb_003186_050 0.1659000371 - - -
9 Hb_001109_170 0.1669500594 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
10 Hb_125116_020 0.1698813263 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
11 Hb_000169_100 0.1709218709 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
12 Hb_000117_150 0.1725563736 - - hypothetical protein RCOM_0079810 [Ricinus communis]
13 Hb_097783_030 0.1766496855 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
14 Hb_001597_090 0.178730527 - - -
15 Hb_181463_020 0.1814106167 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
16 Hb_003450_010 0.1848759381 - - -
17 Hb_000946_130 0.1868089106 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
18 Hb_151870_010 0.1868932083 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_002542_050 0.1872922003 - - -
20 Hb_011476_010 0.1886781688 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_016835_020 Hb_016835_020 Hb_005843_060 Hb_005843_060 Hb_016835_020--Hb_005843_060 Hb_001369_270 Hb_001369_270 Hb_016835_020--Hb_001369_270 Hb_110737_010 Hb_110737_010 Hb_016835_020--Hb_110737_010 Hb_003030_050 Hb_003030_050 Hb_016835_020--Hb_003030_050 Hb_029727_010 Hb_029727_010 Hb_016835_020--Hb_029727_010 Hb_167457_010 Hb_167457_010 Hb_016835_020--Hb_167457_010 Hb_125116_020 Hb_125116_020 Hb_005843_060--Hb_125116_020 Hb_003462_170 Hb_003462_170 Hb_005843_060--Hb_003462_170 Hb_005843_060--Hb_167457_010 Hb_003186_050 Hb_003186_050 Hb_005843_060--Hb_003186_050 Hb_005843_060--Hb_029727_010 Hb_000226_110 Hb_000226_110 Hb_001369_270--Hb_000226_110 Hb_001369_270--Hb_110737_010 Hb_060152_010 Hb_060152_010 Hb_001369_270--Hb_060152_010 Hb_003858_080 Hb_003858_080 Hb_001369_270--Hb_003858_080 Hb_001369_270--Hb_003030_050 Hb_001109_170 Hb_001109_170 Hb_110737_010--Hb_001109_170 Hb_110737_010--Hb_003030_050 Hb_000567_150 Hb_000567_150 Hb_110737_010--Hb_000567_150 Hb_004487_060 Hb_004487_060 Hb_110737_010--Hb_004487_060 Hb_001288_050 Hb_001288_050 Hb_110737_010--Hb_001288_050 Hb_097783_030 Hb_097783_030 Hb_003030_050--Hb_097783_030 Hb_002835_050 Hb_002835_050 Hb_003030_050--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_003030_050--Hb_000907_130 Hb_005155_030 Hb_005155_030 Hb_003030_050--Hb_005155_030 Hb_000169_100 Hb_000169_100 Hb_029727_010--Hb_000169_100 Hb_001005_040 Hb_001005_040 Hb_029727_010--Hb_001005_040 Hb_017225_030 Hb_017225_030 Hb_029727_010--Hb_017225_030 Hb_029727_010--Hb_001288_050 Hb_000260_730 Hb_000260_730 Hb_029727_010--Hb_000260_730 Hb_002631_270 Hb_002631_270 Hb_029727_010--Hb_002631_270 Hb_167457_010--Hb_003186_050 Hb_011476_010 Hb_011476_010 Hb_167457_010--Hb_011476_010 Hb_004274_010 Hb_004274_010 Hb_167457_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_167457_010--Hb_001452_150 Hb_000946_130 Hb_000946_130 Hb_167457_010--Hb_000946_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0654674 0.266174 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.492254 0.77331

CAGE analysis