Hb_016898_010

Information

Type -
Description -
Location Contig16898: 14744-28998
Sequence    

Annotation

kegg
ID cit:102607752
description cell division cycle and apoptosis regulator protein 1-like
nr
ID XP_012067683.1
description PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L221
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15635 PE=4 SV=1
Gene Ontology
ID GO:0005509
description cell division cycle and apoptosis regulator protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15674: 18733-18866 , PASA_asmbl_15675: 24635-26114 , PASA_asmbl_15676: 27601-28079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016898_010 0.0 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
2 Hb_003362_070 0.0387288831 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
3 Hb_000084_120 0.0487645928 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
4 Hb_000101_240 0.0534971263 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
5 Hb_048476_180 0.0565156212 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
6 Hb_003428_070 0.0566340617 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
7 Hb_003952_150 0.0572377233 - - PREDICTED: cactin [Jatropha curcas]
8 Hb_006252_040 0.0587994803 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
9 Hb_002823_030 0.0632081928 - - -
10 Hb_000743_040 0.0646470825 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
11 Hb_000820_170 0.0647717733 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
12 Hb_000190_120 0.0648650333 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
13 Hb_023386_040 0.0661247469 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
14 Hb_004935_030 0.0670954432 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
15 Hb_000567_050 0.067526244 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
16 Hb_004412_010 0.0684954117 - - -
17 Hb_010381_060 0.0696140552 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
18 Hb_002716_130 0.0703213232 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
19 Hb_106371_010 0.0705352736 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_003680_150 0.0707029069 - - srpk, putative [Ricinus communis]

Gene co-expression network

sample Hb_016898_010 Hb_016898_010 Hb_003362_070 Hb_003362_070 Hb_016898_010--Hb_003362_070 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_000101_240 Hb_000101_240 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_003428_070 Hb_003428_070 Hb_016898_010--Hb_003428_070 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_004935_030 Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_003362_070--Hb_048476_180 Hb_003966_030 Hb_003966_030 Hb_003362_070--Hb_003966_030 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_003362_070--Hb_003044_020 Hb_000084_120--Hb_003362_070 Hb_000084_120--Hb_003952_150 Hb_004602_040 Hb_004602_040 Hb_000084_120--Hb_004602_040 Hb_000084_120--Hb_000101_240 Hb_000084_120--Hb_003428_070 Hb_009411_010 Hb_009411_010 Hb_000101_240--Hb_009411_010 Hb_000101_240--Hb_003428_070 Hb_000101_240--Hb_048476_180 Hb_000101_240--Hb_003362_070 Hb_007307_020 Hb_007307_020 Hb_048476_180--Hb_007307_020 Hb_048476_180--Hb_009411_010 Hb_048476_180--Hb_004935_030 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_000920_210 Hb_000920_210 Hb_003952_150--Hb_000920_210 Hb_003952_150--Hb_003362_070 Hb_010381_060 Hb_010381_060 Hb_003952_150--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_003952_150--Hb_000320_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.86499 7.75649 4.05417 6.10093 11.6219 15.1441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.77864 6.76567 6.7065 8.85231 7.2775

CAGE analysis