Hb_016911_010

Information

Type -
Description -
Location Contig16911: 18020-19211
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15010g
description POPTRDRAFT_769783; hypothetical protein
nr
ID XP_002316015.2
description hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HWW3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15010g PE=4 SV=2
Gene Ontology
ID GO:0016787
description universal stress family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15738: 17918-18955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016911_010 0.0 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
2 Hb_009062_020 0.037820467 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
3 Hb_001136_080 0.0721192338 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
4 Hb_039075_010 0.075170928 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
5 Hb_051212_020 0.076452346 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
6 Hb_001775_140 0.0788343222 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
7 Hb_015292_020 0.0822428949 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_000934_120 0.0843528415 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
9 Hb_000333_140 0.0897788585 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
10 Hb_011628_010 0.100185146 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_000310_040 0.1012897379 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
12 Hb_007122_020 0.1055970091 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
13 Hb_000684_110 0.106516892 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
14 Hb_001975_110 0.1066361836 - - -
15 Hb_001709_120 0.1086240059 - - hypothetical protein RCOM_1313640 [Ricinus communis]
16 Hb_089040_010 0.1105727025 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
17 Hb_084812_010 0.1107384166 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
18 Hb_030360_010 0.1122275632 - - -
19 Hb_140627_040 0.1127393846 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
20 Hb_001818_010 0.112849886 - - Disease resistance response protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_016911_010 Hb_016911_010 Hb_009062_020 Hb_009062_020 Hb_016911_010--Hb_009062_020 Hb_001136_080 Hb_001136_080 Hb_016911_010--Hb_001136_080 Hb_039075_010 Hb_039075_010 Hb_016911_010--Hb_039075_010 Hb_051212_020 Hb_051212_020 Hb_016911_010--Hb_051212_020 Hb_001775_140 Hb_001775_140 Hb_016911_010--Hb_001775_140 Hb_015292_020 Hb_015292_020 Hb_016911_010--Hb_015292_020 Hb_009062_020--Hb_001136_080 Hb_009062_020--Hb_001775_140 Hb_000934_120 Hb_000934_120 Hb_009062_020--Hb_000934_120 Hb_009062_020--Hb_015292_020 Hb_009062_020--Hb_051212_020 Hb_000333_140 Hb_000333_140 Hb_001136_080--Hb_000333_140 Hb_011628_010 Hb_011628_010 Hb_001136_080--Hb_011628_010 Hb_006483_070 Hb_006483_070 Hb_001136_080--Hb_006483_070 Hb_001709_120 Hb_001709_120 Hb_001136_080--Hb_001709_120 Hb_030360_010 Hb_030360_010 Hb_039075_010--Hb_030360_010 Hb_000310_040 Hb_000310_040 Hb_039075_010--Hb_000310_040 Hb_004112_080 Hb_004112_080 Hb_039075_010--Hb_004112_080 Hb_039075_010--Hb_000333_140 Hb_039075_010--Hb_011628_010 Hb_001818_010 Hb_001818_010 Hb_051212_020--Hb_001818_010 Hb_002686_220 Hb_002686_220 Hb_051212_020--Hb_002686_220 Hb_009079_020 Hb_009079_020 Hb_051212_020--Hb_009079_020 Hb_051212_020--Hb_000934_120 Hb_002260_140 Hb_002260_140 Hb_051212_020--Hb_002260_140 Hb_001775_140--Hb_000934_120 Hb_016734_110 Hb_016734_110 Hb_001775_140--Hb_016734_110 Hb_001775_140--Hb_001136_080 Hb_001623_560 Hb_001623_560 Hb_001775_140--Hb_001623_560 Hb_015292_020--Hb_000333_140 Hb_015292_020--Hb_001709_120 Hb_001025_130 Hb_001025_130 Hb_015292_020--Hb_001025_130 Hb_002902_060 Hb_002902_060 Hb_015292_020--Hb_002902_060 Hb_007122_020 Hb_007122_020 Hb_015292_020--Hb_007122_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175512 2.84552 15.5311 42.3748 0.0682274 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.285245 4.66273

CAGE analysis