Hb_016924_010

Information

Type -
Description -
Location Contig16924: 26645-28580
Sequence    

Annotation

kegg
ID rcu:RCOM_1366520
description hypothetical protein
nr
ID XP_002515609.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LG53
description UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2
trembl
ID B9RPE0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1366520 PE=4 SV=1
Gene Ontology
ID GO:0016021
description unc93-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15748: 27181-28549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016924_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_029223_010 0.0711717214 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
3 Hb_003195_080 0.095104714 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
4 Hb_000270_640 0.0975739736 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
5 Hb_003145_010 0.1036857038 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
6 Hb_030827_010 0.1038711316 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
7 Hb_069696_020 0.1071436465 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
8 Hb_003849_070 0.1075903853 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
9 Hb_000705_040 0.1124697216 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001541_280 0.1125387082 - - phosphate transporter [Manihot esculenta]
11 Hb_002636_070 0.1128709799 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
12 Hb_000140_460 0.113631534 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
13 Hb_000984_160 0.1143189396 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
14 Hb_000847_030 0.1159373996 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
15 Hb_020141_030 0.1179157269 - - solanesyl diphosphate synthase, putative [Ricinus communis]
16 Hb_000130_140 0.1191245622 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]
17 Hb_003058_170 0.1205247377 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
18 Hb_004052_030 0.1222503372 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
19 Hb_002713_060 0.1237256721 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
20 Hb_002814_010 0.1251116201 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_016924_010 Hb_016924_010 Hb_029223_010 Hb_029223_010 Hb_016924_010--Hb_029223_010 Hb_003195_080 Hb_003195_080 Hb_016924_010--Hb_003195_080 Hb_000270_640 Hb_000270_640 Hb_016924_010--Hb_000270_640 Hb_003145_010 Hb_003145_010 Hb_016924_010--Hb_003145_010 Hb_030827_010 Hb_030827_010 Hb_016924_010--Hb_030827_010 Hb_069696_020 Hb_069696_020 Hb_016924_010--Hb_069696_020 Hb_002636_070 Hb_002636_070 Hb_029223_010--Hb_002636_070 Hb_000705_040 Hb_000705_040 Hb_029223_010--Hb_000705_040 Hb_003142_080 Hb_003142_080 Hb_029223_010--Hb_003142_080 Hb_029223_010--Hb_000270_640 Hb_000836_030 Hb_000836_030 Hb_029223_010--Hb_000836_030 Hb_005569_010 Hb_005569_010 Hb_003195_080--Hb_005569_010 Hb_004835_020 Hb_004835_020 Hb_003195_080--Hb_004835_020 Hb_000984_160 Hb_000984_160 Hb_003195_080--Hb_000984_160 Hb_000424_140 Hb_000424_140 Hb_003195_080--Hb_000424_140 Hb_004052_030 Hb_004052_030 Hb_003195_080--Hb_004052_030 Hb_000270_640--Hb_000705_040 Hb_001541_280 Hb_001541_280 Hb_000270_640--Hb_001541_280 Hb_000968_010 Hb_000968_010 Hb_000270_640--Hb_000968_010 Hb_000373_010 Hb_000373_010 Hb_000270_640--Hb_000373_010 Hb_000270_640--Hb_002636_070 Hb_004979_070 Hb_004979_070 Hb_000270_640--Hb_004979_070 Hb_003145_010--Hb_030827_010 Hb_011242_010 Hb_011242_010 Hb_003145_010--Hb_011242_010 Hb_001417_060 Hb_001417_060 Hb_003145_010--Hb_001417_060 Hb_000627_050 Hb_000627_050 Hb_003145_010--Hb_000627_050 Hb_003145_010--Hb_029223_010 Hb_030827_010--Hb_069696_020 Hb_030827_010--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_030827_010--Hb_000703_120 Hb_001278_090 Hb_001278_090 Hb_030827_010--Hb_001278_090 Hb_131876_010 Hb_131876_010 Hb_069696_020--Hb_131876_010 Hb_002073_150 Hb_002073_150 Hb_069696_020--Hb_002073_150 Hb_069696_020--Hb_000627_050 Hb_069696_020--Hb_000984_160 Hb_000140_460 Hb_000140_460 Hb_069696_020--Hb_000140_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.243999 2.7237 8.05053 8.93644 0.192264 0.385079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0591786 0.11192 3.00078 20.2843

CAGE analysis