Hb_017002_010

Information

Type -
Description -
Location Contig17002: 703-1822
Sequence    

Annotation

kegg
ID rcu:RCOM_1122060
description Alpha-expansin 15 precursor, putative
nr
ID XP_012092696.1
description PREDICTED: expansin-A15-like [Jatropha curcas]
swissprot
ID O80622
description Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2
trembl
ID A0A067J950
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06862 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-a15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017002_010 0.0 - - PREDICTED: expansin-A15-like [Jatropha curcas]
2 Hb_014720_100 0.1423126633 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
3 Hb_008695_220 0.1618308568 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
4 Hb_178968_040 0.1632258275 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007574_040 0.1706737629 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
6 Hb_001635_010 0.1742344241 - - -
7 Hb_004079_050 0.1851928666 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
8 Hb_000054_010 0.1949381052 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
9 Hb_053709_040 0.1963852251 - - putative actin-97 protein [Linum usitatissimum]
10 Hb_000622_120 0.1974720757 - - hypothetical protein [Hevea brasiliensis]
11 Hb_000950_030 0.1982801057 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
12 Hb_034726_010 0.1985622014 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000246_130 0.2030448772 - - tubulin alpha chain, putative [Ricinus communis]
14 Hb_000997_380 0.2032120224 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
15 Hb_003058_230 0.2036079403 - - copper ion binding protein, putative [Ricinus communis]
16 Hb_006634_110 0.2079652099 - - BnaC04g40780D [Brassica napus]
17 Hb_003020_200 0.2089818475 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
18 Hb_003813_010 0.2118934144 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
19 Hb_008185_020 0.2148817137 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
20 Hb_003207_150 0.2165690022 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]

Gene co-expression network

sample Hb_017002_010 Hb_017002_010 Hb_014720_100 Hb_014720_100 Hb_017002_010--Hb_014720_100 Hb_008695_220 Hb_008695_220 Hb_017002_010--Hb_008695_220 Hb_178968_040 Hb_178968_040 Hb_017002_010--Hb_178968_040 Hb_007574_040 Hb_007574_040 Hb_017002_010--Hb_007574_040 Hb_001635_010 Hb_001635_010 Hb_017002_010--Hb_001635_010 Hb_004079_050 Hb_004079_050 Hb_017002_010--Hb_004079_050 Hb_014720_100--Hb_178968_040 Hb_014720_100--Hb_008695_220 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_002686_260 Hb_002686_260 Hb_014720_100--Hb_002686_260 Hb_003875_010 Hb_003875_010 Hb_014720_100--Hb_003875_010 Hb_008695_220--Hb_007574_040 Hb_000950_030 Hb_000950_030 Hb_008695_220--Hb_000950_030 Hb_000246_130 Hb_000246_130 Hb_008695_220--Hb_000246_130 Hb_000455_070 Hb_000455_070 Hb_008695_220--Hb_000455_070 Hb_178968_040--Hb_004079_050 Hb_178968_040--Hb_002686_260 Hb_000345_080 Hb_000345_080 Hb_178968_040--Hb_000345_080 Hb_004125_070 Hb_004125_070 Hb_178968_040--Hb_004125_070 Hb_000297_140 Hb_000297_140 Hb_007574_040--Hb_000297_140 Hb_000054_010 Hb_000054_010 Hb_007574_040--Hb_000054_010 Hb_000622_120 Hb_000622_120 Hb_007574_040--Hb_000622_120 Hb_002759_030 Hb_002759_030 Hb_007574_040--Hb_002759_030 Hb_000622_190 Hb_000622_190 Hb_007574_040--Hb_000622_190 Hb_000157_050 Hb_000157_050 Hb_001635_010--Hb_000157_050 Hb_001635_010--Hb_014720_100 Hb_002316_010 Hb_002316_010 Hb_001635_010--Hb_002316_010 Hb_000258_060 Hb_000258_060 Hb_001635_010--Hb_000258_060 Hb_000345_060 Hb_000345_060 Hb_001635_010--Hb_000345_060 Hb_001247_030 Hb_001247_030 Hb_004079_050--Hb_001247_030 Hb_006634_110 Hb_006634_110 Hb_004079_050--Hb_006634_110 Hb_122636_010 Hb_122636_010 Hb_004079_050--Hb_122636_010 Hb_188313_010 Hb_188313_010 Hb_004079_050--Hb_188313_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244104 0.127394 1.44414 11.8078 0.286965 0.494746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05941 1.1271 0.178233 0.376116 2.07776

CAGE analysis