Hb_017002_020

Information

Type -
Description -
Location Contig17002: 4160-7257
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05750g
description POPTRDRAFT_571236; hypothetical protein
nr
ID XP_012092697.1
description PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J956
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06863 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring u-box superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017002_020 0.0 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
2 Hb_002820_110 0.0885254044 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
3 Hb_000510_330 0.1058431426 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
4 Hb_000444_080 0.1084917633 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
5 Hb_002045_040 0.1090562074 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_001534_050 0.1121296754 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
7 Hb_002876_240 0.1123734737 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
8 Hb_002234_140 0.1149371071 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
9 Hb_000286_070 0.1203913863 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
10 Hb_003747_200 0.1233908418 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
11 Hb_000462_130 0.1237931299 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
12 Hb_004785_190 0.1252172668 - - PHD finger family protein [Populus trichocarpa]
13 Hb_007154_020 0.1256439383 - - -
14 Hb_003749_010 0.1267056088 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000009_530 0.1269650973 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
16 Hb_003687_230 0.1269674338 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
17 Hb_000109_090 0.1273298113 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
18 Hb_004449_170 0.1274174105 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
19 Hb_004787_060 0.1290353163 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
20 Hb_002338_020 0.1290585027 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]

Gene co-expression network

sample Hb_017002_020 Hb_017002_020 Hb_002820_110 Hb_002820_110 Hb_017002_020--Hb_002820_110 Hb_000510_330 Hb_000510_330 Hb_017002_020--Hb_000510_330 Hb_000444_080 Hb_000444_080 Hb_017002_020--Hb_000444_080 Hb_002045_040 Hb_002045_040 Hb_017002_020--Hb_002045_040 Hb_001534_050 Hb_001534_050 Hb_017002_020--Hb_001534_050 Hb_002876_240 Hb_002876_240 Hb_017002_020--Hb_002876_240 Hb_002820_110--Hb_000510_330 Hb_002820_110--Hb_002876_240 Hb_000000_360 Hb_000000_360 Hb_002820_110--Hb_000000_360 Hb_008686_080 Hb_008686_080 Hb_002820_110--Hb_008686_080 Hb_000094_330 Hb_000094_330 Hb_002820_110--Hb_000094_330 Hb_000286_070 Hb_000286_070 Hb_000510_330--Hb_000286_070 Hb_000510_330--Hb_000000_360 Hb_000107_190 Hb_000107_190 Hb_000510_330--Hb_000107_190 Hb_000510_330--Hb_002876_240 Hb_002234_140 Hb_002234_140 Hb_000444_080--Hb_002234_140 Hb_010921_010 Hb_010921_010 Hb_000444_080--Hb_010921_010 Hb_000009_530 Hb_000009_530 Hb_000444_080--Hb_000009_530 Hb_001552_020 Hb_001552_020 Hb_000444_080--Hb_001552_020 Hb_000116_310 Hb_000116_310 Hb_000444_080--Hb_000116_310 Hb_001512_060 Hb_001512_060 Hb_000444_080--Hb_001512_060 Hb_011381_060 Hb_011381_060 Hb_002045_040--Hb_011381_060 Hb_000805_120 Hb_000805_120 Hb_002045_040--Hb_000805_120 Hb_145880_030 Hb_145880_030 Hb_002045_040--Hb_145880_030 Hb_000251_070 Hb_000251_070 Hb_002045_040--Hb_000251_070 Hb_010407_040 Hb_010407_040 Hb_002045_040--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_002045_040--Hb_002374_170 Hb_000462_130 Hb_000462_130 Hb_001534_050--Hb_000462_130 Hb_003125_200 Hb_003125_200 Hb_001534_050--Hb_003125_200 Hb_028995_040 Hb_028995_040 Hb_001534_050--Hb_028995_040 Hb_004491_010 Hb_004491_010 Hb_001534_050--Hb_004491_010 Hb_000771_120 Hb_000771_120 Hb_001534_050--Hb_000771_120 Hb_003078_040 Hb_003078_040 Hb_001534_050--Hb_003078_040 Hb_002876_240--Hb_000094_330 Hb_002820_050 Hb_002820_050 Hb_002876_240--Hb_002820_050 Hb_004453_130 Hb_004453_130 Hb_002876_240--Hb_004453_130 Hb_146673_010 Hb_146673_010 Hb_002876_240--Hb_146673_010 Hb_000529_030 Hb_000529_030 Hb_002876_240--Hb_000529_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83864 2.18201 4.18982 0.656871 2.90047 2.36246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89968 4.40125 1.58622 1.61712 1.25305

CAGE analysis