Hb_017014_020

Information

Type -
Description -
Location Contig17014: 6708-7519
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016020
description syntaxin-132-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017014_020 0.0 - - -
2 Hb_022614_010 0.1083869326 - - -
3 Hb_162090_010 0.1148914198 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
4 Hb_006162_020 0.1283329435 - - -
5 Hb_009083_030 0.1438401584 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
6 Hb_188313_010 0.1651455389 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
7 Hb_000025_080 0.176090411 - - -
8 Hb_005107_020 0.1856879087 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
9 Hb_001059_140 0.1875986478 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
10 Hb_041601_010 0.1903223284 - - -
11 Hb_000034_090 0.190828696 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
12 Hb_184541_010 0.1928088394 - - PREDICTED: selT-like protein [Jatropha curcas]
13 Hb_183522_010 0.2003064407 - - Far upstream element-binding protein, putative [Ricinus communis]
14 Hb_000953_120 0.202824626 - - -
15 Hb_011200_010 0.204252824 - - -
16 Hb_013394_100 0.2066169967 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
17 Hb_006794_010 0.208459998 - - elicitor-responsive protein [Hevea brasiliensis]
18 Hb_114079_010 0.2113450663 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
19 Hb_121694_010 0.2121308748 - - structural constituent of ribosome, putative [Ricinus communis]
20 Hb_047691_010 0.2125495902 - - Uncharacterized protein F383_01974 [Gossypium arboreum]

Gene co-expression network

sample Hb_017014_020 Hb_017014_020 Hb_022614_010 Hb_022614_010 Hb_017014_020--Hb_022614_010 Hb_162090_010 Hb_162090_010 Hb_017014_020--Hb_162090_010 Hb_006162_020 Hb_006162_020 Hb_017014_020--Hb_006162_020 Hb_009083_030 Hb_009083_030 Hb_017014_020--Hb_009083_030 Hb_188313_010 Hb_188313_010 Hb_017014_020--Hb_188313_010 Hb_000025_080 Hb_000025_080 Hb_017014_020--Hb_000025_080 Hb_022614_010--Hb_162090_010 Hb_022614_010--Hb_006162_020 Hb_011200_010 Hb_011200_010 Hb_022614_010--Hb_011200_010 Hb_005107_020 Hb_005107_020 Hb_022614_010--Hb_005107_020 Hb_013394_100 Hb_013394_100 Hb_022614_010--Hb_013394_100 Hb_162090_010--Hb_006162_020 Hb_162090_010--Hb_005107_020 Hb_000953_120 Hb_000953_120 Hb_162090_010--Hb_000953_120 Hb_041601_010 Hb_041601_010 Hb_162090_010--Hb_041601_010 Hb_006162_020--Hb_005107_020 Hb_000034_090 Hb_000034_090 Hb_006162_020--Hb_000034_090 Hb_183522_010 Hb_183522_010 Hb_006162_020--Hb_183522_010 Hb_009083_030--Hb_188313_010 Hb_182713_020 Hb_182713_020 Hb_009083_030--Hb_182713_020 Hb_100137_010 Hb_100137_010 Hb_009083_030--Hb_100137_010 Hb_184541_010 Hb_184541_010 Hb_009083_030--Hb_184541_010 Hb_002611_030 Hb_002611_030 Hb_009083_030--Hb_002611_030 Hb_188313_010--Hb_182713_020 Hb_001247_030 Hb_001247_030 Hb_188313_010--Hb_001247_030 Hb_188313_010--Hb_184541_010 Hb_001217_010 Hb_001217_010 Hb_188313_010--Hb_001217_010 Hb_188313_010--Hb_100137_010 Hb_000025_080--Hb_000953_120 Hb_009119_010 Hb_009119_010 Hb_000025_080--Hb_009119_010 Hb_000025_080--Hb_162090_010 Hb_002016_030 Hb_002016_030 Hb_000025_080--Hb_002016_030 Hb_006794_010 Hb_006794_010 Hb_000025_080--Hb_006794_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.0017 5.59338 6.16125 110.799 1.50461 47.2518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.68349 4.97704 1.50941 7.61034 5.61083

CAGE analysis