Hb_017043_030

Information

Type -
Description -
Location Contig17043: 19177-20747
Sequence    

Annotation

kegg
ID cic:CICLE_v10031384mg
description hypothetical protein
nr
ID KDO69109.1
description hypothetical protein CISIN_1g011604mg [Citrus sinensis]
swissprot
ID Q9FFJ8
description L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1
trembl
ID A0A067FSG7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011604mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15934: 20072-20680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017043_030 0.0 - - hypothetical protein CISIN_1g011604mg [Citrus sinensis]
2 Hb_072212_010 0.1529111189 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
3 Hb_071126_010 0.1637544623 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_005288_180 0.1727680101 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_004324_120 0.177191956 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
6 Hb_137600_010 0.1783140889 - - 50S ribosomal protein L1p, putative [Ricinus communis]
7 Hb_000069_500 0.1790388552 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
8 Hb_000934_260 0.1805509375 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_005618_150 0.1817838756 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
10 Hb_003602_030 0.1856954005 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
11 Hb_008092_050 0.1906333663 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
12 Hb_004208_090 0.1945976137 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_001213_040 0.1948696022 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
14 Hb_005015_020 0.1965220447 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
15 Hb_000395_090 0.1966434738 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
16 Hb_000254_120 0.19716622 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000637_070 0.1996551157 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
18 Hb_001307_040 0.2043903804 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
19 Hb_003862_040 0.2045324334 - - Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_001907_070 0.2045837476 - - 50S ribosomal protein L1p, putative [Ricinus communis]

Gene co-expression network

sample Hb_017043_030 Hb_017043_030 Hb_072212_010 Hb_072212_010 Hb_017043_030--Hb_072212_010 Hb_071126_010 Hb_071126_010 Hb_017043_030--Hb_071126_010 Hb_005288_180 Hb_005288_180 Hb_017043_030--Hb_005288_180 Hb_004324_120 Hb_004324_120 Hb_017043_030--Hb_004324_120 Hb_137600_010 Hb_137600_010 Hb_017043_030--Hb_137600_010 Hb_000069_500 Hb_000069_500 Hb_017043_030--Hb_000069_500 Hb_001155_020 Hb_001155_020 Hb_072212_010--Hb_001155_020 Hb_000395_090 Hb_000395_090 Hb_072212_010--Hb_000395_090 Hb_000053_120 Hb_000053_120 Hb_072212_010--Hb_000053_120 Hb_004611_040 Hb_004611_040 Hb_072212_010--Hb_004611_040 Hb_001338_160 Hb_001338_160 Hb_072212_010--Hb_001338_160 Hb_000186_110 Hb_000186_110 Hb_071126_010--Hb_000186_110 Hb_003861_150 Hb_003861_150 Hb_071126_010--Hb_003861_150 Hb_011649_010 Hb_011649_010 Hb_071126_010--Hb_011649_010 Hb_071126_010--Hb_072212_010 Hb_000118_090 Hb_000118_090 Hb_071126_010--Hb_000118_090 Hb_005015_020 Hb_005015_020 Hb_005288_180--Hb_005015_020 Hb_004346_040 Hb_004346_040 Hb_005288_180--Hb_004346_040 Hb_005288_180--Hb_004324_120 Hb_001250_020 Hb_001250_020 Hb_005288_180--Hb_001250_020 Hb_003929_220 Hb_003929_220 Hb_005288_180--Hb_003929_220 Hb_002928_030 Hb_002928_030 Hb_005288_180--Hb_002928_030 Hb_004324_120--Hb_005015_020 Hb_012539_040 Hb_012539_040 Hb_004324_120--Hb_012539_040 Hb_004324_120--Hb_004346_040 Hb_004324_120--Hb_137600_010 Hb_000446_040 Hb_000446_040 Hb_004324_120--Hb_000446_040 Hb_000479_210 Hb_000479_210 Hb_137600_010--Hb_000479_210 Hb_003602_030 Hb_003602_030 Hb_137600_010--Hb_003602_030 Hb_001999_260 Hb_001999_260 Hb_137600_010--Hb_001999_260 Hb_005488_190 Hb_005488_190 Hb_137600_010--Hb_005488_190 Hb_173660_010 Hb_173660_010 Hb_137600_010--Hb_173660_010 Hb_000574_320 Hb_000574_320 Hb_000069_500--Hb_000574_320 Hb_001213_040 Hb_001213_040 Hb_000069_500--Hb_001213_040 Hb_000069_500--Hb_005015_020 Hb_024066_040 Hb_024066_040 Hb_000069_500--Hb_024066_040 Hb_000069_500--Hb_005288_180 Hb_140389_010 Hb_140389_010 Hb_000069_500--Hb_140389_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.330878 0.765832 2.04392 0.241995 0.499197 0.472176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.034397 0.108239 0.101337 0.0540713 3.21494

CAGE analysis