Hb_017043_040

Information

Type -
Description -
Location Contig17043: 24576-25706
Sequence    

Annotation

kegg
ID rcu:RCOM_0498440
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002530412.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q9C7U5
description Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2
trembl
ID B9SWP3
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0498440 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017043_040 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_012655_010 0.0837774163 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
3 Hb_162174_010 0.0908536371 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
4 Hb_000109_140 0.0991729685 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
5 Hb_005731_010 0.100913667 - - hypothetical protein VITISV_030941 [Vitis vinifera]
6 Hb_000941_110 0.1035880244 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_119443_010 0.1102275321 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
8 Hb_004076_060 0.1158697397 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
9 Hb_000189_180 0.1161969477 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
10 Hb_000639_010 0.1227444875 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
11 Hb_001958_010 0.1240136324 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
12 Hb_004116_050 0.1268755327 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
13 Hb_005018_010 0.1305092293 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_176680_010 0.1355727722 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
15 Hb_000621_030 0.138680476 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
16 Hb_002001_030 0.1428187555 - - Plasma membrane ATPase 4 [Gossypium arboreum]
17 Hb_032572_010 0.1431802217 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
18 Hb_002391_030 0.1436645219 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
19 Hb_039435_010 0.1445014268 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]
20 Hb_001244_070 0.1486724746 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]

Gene co-expression network

sample Hb_017043_040 Hb_017043_040 Hb_012655_010 Hb_012655_010 Hb_017043_040--Hb_012655_010 Hb_162174_010 Hb_162174_010 Hb_017043_040--Hb_162174_010 Hb_000109_140 Hb_000109_140 Hb_017043_040--Hb_000109_140 Hb_005731_010 Hb_005731_010 Hb_017043_040--Hb_005731_010 Hb_000941_110 Hb_000941_110 Hb_017043_040--Hb_000941_110 Hb_119443_010 Hb_119443_010 Hb_017043_040--Hb_119443_010 Hb_012655_010--Hb_005731_010 Hb_004076_060 Hb_004076_060 Hb_012655_010--Hb_004076_060 Hb_012655_010--Hb_000941_110 Hb_012655_010--Hb_000109_140 Hb_004204_060 Hb_004204_060 Hb_012655_010--Hb_004204_060 Hb_162174_010--Hb_012655_010 Hb_004881_070 Hb_004881_070 Hb_162174_010--Hb_004881_070 Hb_162174_010--Hb_005731_010 Hb_000621_030 Hb_000621_030 Hb_162174_010--Hb_000621_030 Hb_005018_010 Hb_005018_010 Hb_162174_010--Hb_005018_010 Hb_000189_180 Hb_000189_180 Hb_000109_140--Hb_000189_180 Hb_000109_140--Hb_005731_010 Hb_001958_010 Hb_001958_010 Hb_000109_140--Hb_001958_010 Hb_000109_140--Hb_004076_060 Hb_003894_170 Hb_003894_170 Hb_000109_140--Hb_003894_170 Hb_005731_010--Hb_004076_060 Hb_005731_010--Hb_000189_180 Hb_005731_010--Hb_000941_110 Hb_005731_010--Hb_001958_010 Hb_000941_110--Hb_004076_060 Hb_000941_110--Hb_001958_010 Hb_003911_050 Hb_003911_050 Hb_000941_110--Hb_003911_050 Hb_000941_110--Hb_005018_010 Hb_176680_010 Hb_176680_010 Hb_119443_010--Hb_176680_010 Hb_039435_010 Hb_039435_010 Hb_119443_010--Hb_039435_010 Hb_006053_020 Hb_006053_020 Hb_119443_010--Hb_006053_020 Hb_005155_030 Hb_005155_030 Hb_119443_010--Hb_005155_030 Hb_113379_010 Hb_113379_010 Hb_119443_010--Hb_113379_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0720111 0.0598841 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0274877 0.0706789

CAGE analysis