Hb_017075_010

Information

Type transcription factor
Description TF Family: SNF2
Location Contig17075: 10004-11545
Sequence    

Annotation

kegg
ID rcu:RCOM_0314440
description helicase, putative
nr
ID XP_012072730.1
description PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
swissprot
ID Q9FF61
description Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
trembl
ID A0A067KZL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06342 PE=4 SV=1
Gene Ontology
ID GO:0003676
description swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15951: 9939-10056 , PASA_asmbl_15952: 10114-49590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017075_010 0.0 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
2 Hb_001322_210 0.0758305527 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
3 Hb_002291_070 0.0816982416 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
4 Hb_000627_080 0.0842303694 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_000780_220 0.0891149326 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
6 Hb_007849_020 0.0914064265 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
7 Hb_000390_070 0.0921823054 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
8 Hb_003216_080 0.0926280098 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
9 Hb_001930_010 0.092880047 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
10 Hb_001871_040 0.0941022661 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
11 Hb_000357_080 0.095842101 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Jatropha curcas]
12 Hb_004055_040 0.0959606552 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
13 Hb_000244_250 0.0960977337 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
14 Hb_000046_450 0.096449777 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
15 Hb_123777_030 0.0969681091 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
16 Hb_000878_010 0.0990916777 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
17 Hb_000005_380 0.0999312088 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
18 Hb_003531_060 0.1000511558 - - unnamed protein product [Coffea canephora]
19 Hb_000915_050 0.1003382693 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004096_020 0.1005441805 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_017075_010 Hb_017075_010 Hb_001322_210 Hb_001322_210 Hb_017075_010--Hb_001322_210 Hb_002291_070 Hb_002291_070 Hb_017075_010--Hb_002291_070 Hb_000627_080 Hb_000627_080 Hb_017075_010--Hb_000627_080 Hb_000780_220 Hb_000780_220 Hb_017075_010--Hb_000780_220 Hb_007849_020 Hb_007849_020 Hb_017075_010--Hb_007849_020 Hb_000390_070 Hb_000390_070 Hb_017075_010--Hb_000390_070 Hb_001322_210--Hb_000780_220 Hb_001322_210--Hb_002291_070 Hb_003216_080 Hb_003216_080 Hb_001322_210--Hb_003216_080 Hb_002471_210 Hb_002471_210 Hb_001322_210--Hb_002471_210 Hb_000347_130 Hb_000347_130 Hb_001322_210--Hb_000347_130 Hb_001322_210--Hb_007849_020 Hb_002291_070--Hb_002471_210 Hb_002291_070--Hb_007849_020 Hb_002291_070--Hb_000780_220 Hb_000475_020 Hb_000475_020 Hb_002291_070--Hb_000475_020 Hb_000250_070 Hb_000250_070 Hb_002291_070--Hb_000250_070 Hb_000627_080--Hb_000390_070 Hb_004055_040 Hb_004055_040 Hb_000627_080--Hb_004055_040 Hb_000244_250 Hb_000244_250 Hb_000627_080--Hb_000244_250 Hb_001930_010 Hb_001930_010 Hb_000627_080--Hb_001930_010 Hb_002255_070 Hb_002255_070 Hb_000627_080--Hb_002255_070 Hb_000915_050 Hb_000915_050 Hb_000627_080--Hb_000915_050 Hb_000780_220--Hb_002471_210 Hb_000743_040 Hb_000743_040 Hb_000780_220--Hb_000743_040 Hb_000780_220--Hb_007849_020 Hb_000046_450 Hb_000046_450 Hb_000780_220--Hb_000046_450 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_007849_020--Hb_002471_210 Hb_007849_020--Hb_000250_070 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_007757_110 Hb_007757_110 Hb_000390_070--Hb_007757_110 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000390_070--Hb_000244_250 Hb_000390_070--Hb_004055_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.7705 23.6936 5.41869 6.66036 28.9545 43.1823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7655 6.35508 25.2477 16.6961 16.2017

CAGE analysis