Hb_017075_020

Information

Type -
Description -
Location Contig17075: 19279-21923
Sequence    

Annotation

kegg
ID tcc:TCM_003326
description hypothetical protein
nr
ID XP_012483107.1
description PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061DN47
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003326 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017075_020 0.0 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
2 Hb_154726_010 0.2426795048 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
3 Hb_053079_010 0.2870840151 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_171685_020 0.2901987386 - - conserved hypothetical protein [Ricinus communis]
5 Hb_072212_020 0.2916710699 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
6 Hb_101733_010 0.2926609447 - - conserved hypothetical protein [Ricinus communis]
7 Hb_024411_010 0.2953155844 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_013420_010 0.2971449907 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002687_070 0.2988415506 - - polyprotein [Ananas comosus]
10 Hb_123046_010 0.3012268014 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
11 Hb_024066_050 0.310783622 - - lipoxygenase, putative [Ricinus communis]
12 Hb_013420_120 0.3140125795 - - -
13 Hb_002686_060 0.3147531376 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011218_030 0.3151528305 - - hypothetical protein VITISV_002891 [Vitis vinifera]
15 Hb_006040_050 0.3167123585 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006538_180 0.3173084421 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
17 Hb_171685_030 0.3180995013 - - URF-1 [Citrullus lanatus]
18 Hb_013080_010 0.3192863242 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_006615_210 0.3202205602 - - PREDICTED: uncharacterized protein LOC105640677 isoform X2 [Jatropha curcas]
20 Hb_011287_070 0.3211207109 - - -

Gene co-expression network

sample Hb_017075_020 Hb_017075_020 Hb_154726_010 Hb_154726_010 Hb_017075_020--Hb_154726_010 Hb_053079_010 Hb_053079_010 Hb_017075_020--Hb_053079_010 Hb_171685_020 Hb_171685_020 Hb_017075_020--Hb_171685_020 Hb_072212_020 Hb_072212_020 Hb_017075_020--Hb_072212_020 Hb_101733_010 Hb_101733_010 Hb_017075_020--Hb_101733_010 Hb_024411_010 Hb_024411_010 Hb_017075_020--Hb_024411_010 Hb_001450_010 Hb_001450_010 Hb_154726_010--Hb_001450_010 Hb_003375_050 Hb_003375_050 Hb_154726_010--Hb_003375_050 Hb_041813_050 Hb_041813_050 Hb_154726_010--Hb_041813_050 Hb_057638_010 Hb_057638_010 Hb_154726_010--Hb_057638_010 Hb_100288_010 Hb_100288_010 Hb_154726_010--Hb_100288_010 Hb_013080_010 Hb_013080_010 Hb_053079_010--Hb_013080_010 Hb_053079_010--Hb_024411_010 Hb_006040_050 Hb_006040_050 Hb_053079_010--Hb_006040_050 Hb_005466_010 Hb_005466_010 Hb_053079_010--Hb_005466_010 Hb_027010_030 Hb_027010_030 Hb_053079_010--Hb_027010_030 Hb_151320_010 Hb_151320_010 Hb_053079_010--Hb_151320_010 Hb_002687_070 Hb_002687_070 Hb_171685_020--Hb_002687_070 Hb_171685_020--Hb_006040_050 Hb_013420_120 Hb_013420_120 Hb_171685_020--Hb_013420_120 Hb_013420_090 Hb_013420_090 Hb_171685_020--Hb_013420_090 Hb_171685_040 Hb_171685_040 Hb_171685_020--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_171685_020--Hb_013420_010 Hb_062273_010 Hb_062273_010 Hb_072212_020--Hb_062273_010 Hb_062192_030 Hb_062192_030 Hb_072212_020--Hb_062192_030 Hb_042463_020 Hb_042463_020 Hb_072212_020--Hb_042463_020 Hb_088080_030 Hb_088080_030 Hb_072212_020--Hb_088080_030 Hb_189099_020 Hb_189099_020 Hb_072212_020--Hb_189099_020 Hb_034168_070 Hb_034168_070 Hb_072212_020--Hb_034168_070 Hb_101733_010--Hb_072212_020 Hb_144838_010 Hb_144838_010 Hb_101733_010--Hb_144838_010 Hb_101733_010--Hb_088080_030 Hb_000879_260 Hb_000879_260 Hb_101733_010--Hb_000879_260 Hb_007201_010 Hb_007201_010 Hb_101733_010--Hb_007201_010 Hb_101733_010--Hb_013420_010 Hb_024411_010--Hb_013080_010 Hb_086607_010 Hb_086607_010 Hb_024411_010--Hb_086607_010 Hb_024411_010--Hb_002687_070 Hb_000518_040 Hb_000518_040 Hb_024411_010--Hb_000518_040 Hb_024411_010--Hb_171685_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0438751 0.0218652 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0334635 0 0.0493432 0.0105172 0.219728

CAGE analysis