Hb_017075_030

Information

Type -
Description -
Location Contig17075: 48850-54245
Sequence    

Annotation

kegg
ID rcu:RCOM_1633180
description helicase, putative (EC:2.7.11.1)
nr
ID XP_002517285.1
description helicase, putative [Ricinus communis]
swissprot
ID Q6PCN7
description Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1
trembl
ID B9RU66
description Helicase, putative OS=Ricinus communis GN=RCOM_1633180 PE=4 SV=1
Gene Ontology
ID GO:0005515
description swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15952: 10114-49590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017075_030 0.0 - - helicase, putative [Ricinus communis]
2 Hb_033883_060 0.0658357682 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
3 Hb_000406_240 0.0689832488 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
4 Hb_003106_150 0.0728752863 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
5 Hb_031042_070 0.0770955267 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001946_300 0.0777537139 - - PREDICTED: F-box protein At-B [Jatropha curcas]
7 Hb_003878_140 0.0795889246 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
8 Hb_000283_130 0.0796543408 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
9 Hb_001616_050 0.0822773728 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
10 Hb_005883_010 0.083696927 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001157_180 0.0838311221 - - protein binding protein, putative [Ricinus communis]
12 Hb_032202_240 0.084238596 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
13 Hb_001633_040 0.0846318998 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
14 Hb_004032_180 0.0849309975 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
15 Hb_000363_130 0.0850140144 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
16 Hb_007982_070 0.0855026713 - - PREDICTED: protein CPR-5 [Jatropha curcas]
17 Hb_010128_090 0.0877798365 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
18 Hb_000300_360 0.087932687 - - PREDICTED: exosome component 10 [Jatropha curcas]
19 Hb_000865_080 0.0883282231 - - arsenite-resistance protein, putative [Ricinus communis]
20 Hb_004635_050 0.0887979776 - - nucleolar phosphoprotein, putative [Ricinus communis]

Gene co-expression network

sample Hb_017075_030 Hb_017075_030 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_003106_150 Hb_003106_150 Hb_017075_030--Hb_003106_150 Hb_031042_070 Hb_031042_070 Hb_017075_030--Hb_031042_070 Hb_001946_300 Hb_001946_300 Hb_017075_030--Hb_001946_300 Hb_003878_140 Hb_003878_140 Hb_017075_030--Hb_003878_140 Hb_033883_060--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_033883_060--Hb_001633_040 Hb_004635_050 Hb_004635_050 Hb_033883_060--Hb_004635_050 Hb_004920_130 Hb_004920_130 Hb_033883_060--Hb_004920_130 Hb_002659_060 Hb_002659_060 Hb_033883_060--Hb_002659_060 Hb_007982_070 Hb_007982_070 Hb_000406_240--Hb_007982_070 Hb_001486_080 Hb_001486_080 Hb_000406_240--Hb_001486_080 Hb_005883_010 Hb_005883_010 Hb_000406_240--Hb_005883_010 Hb_000140_330 Hb_000140_330 Hb_000406_240--Hb_000140_330 Hb_000406_240--Hb_004635_050 Hb_010128_070 Hb_010128_070 Hb_003106_150--Hb_010128_070 Hb_002849_080 Hb_002849_080 Hb_003106_150--Hb_002849_080 Hb_001157_180 Hb_001157_180 Hb_003106_150--Hb_001157_180 Hb_000504_160 Hb_000504_160 Hb_003106_150--Hb_000504_160 Hb_010128_090 Hb_010128_090 Hb_003106_150--Hb_010128_090 Hb_031042_070--Hb_001633_040 Hb_031042_070--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_031042_070--Hb_000300_360 Hb_002163_010 Hb_002163_010 Hb_031042_070--Hb_002163_010 Hb_007632_020 Hb_007632_020 Hb_031042_070--Hb_007632_020 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_001946_300--Hb_000504_160 Hb_000224_060 Hb_000224_060 Hb_003878_140--Hb_000224_060 Hb_002977_010 Hb_002977_010 Hb_003878_140--Hb_002977_010 Hb_001616_050 Hb_001616_050 Hb_003878_140--Hb_001616_050 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_000865_080 Hb_000865_080 Hb_003878_140--Hb_000865_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.1957 31.5882 12.0217 7.48304 24.3045 28.7131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1045 8.70139 10.657 10.9714 6.64902

CAGE analysis