Hb_017098_010

Information

Type -
Description -
Location Contig17098: 5007-11757
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18100g
description POPTRDRAFT_758007; ABC transporter family protein
nr
ID AIU41639.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9SKX0
description ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3
trembl
ID A0A097P9P6
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCC13 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15971: 5025-8200 , PASA_asmbl_15972: 9272-11047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017098_010 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_016760_010 0.1459159613 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_003777_250 0.1485104729 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
4 Hb_003632_030 0.1489665137 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
5 Hb_011616_020 0.1580641472 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
6 Hb_000529_140 0.1626777742 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001080_150 0.1629763815 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
8 Hb_005375_110 0.1694235492 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
9 Hb_002636_040 0.1716313505 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
10 Hb_000390_030 0.1740726656 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
11 Hb_001675_050 0.1741702485 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
12 Hb_002681_080 0.1744760143 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
13 Hb_000599_230 0.1749394458 - - -
14 Hb_010344_030 0.1759364237 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000011_220 0.1772096112 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
16 Hb_006846_080 0.177504308 - - calnexin, putative [Ricinus communis]
17 Hb_005116_140 0.1792845198 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
18 Hb_002740_190 0.182419748 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
19 Hb_000328_050 0.1828404907 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
20 Hb_000056_090 0.1834463089 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_017098_010 Hb_017098_010 Hb_016760_010 Hb_016760_010 Hb_017098_010--Hb_016760_010 Hb_003777_250 Hb_003777_250 Hb_017098_010--Hb_003777_250 Hb_003632_030 Hb_003632_030 Hb_017098_010--Hb_003632_030 Hb_011616_020 Hb_011616_020 Hb_017098_010--Hb_011616_020 Hb_000529_140 Hb_000529_140 Hb_017098_010--Hb_000529_140 Hb_001080_150 Hb_001080_150 Hb_017098_010--Hb_001080_150 Hb_010984_010 Hb_010984_010 Hb_016760_010--Hb_010984_010 Hb_001009_260 Hb_001009_260 Hb_016760_010--Hb_001009_260 Hb_003142_010 Hb_003142_010 Hb_016760_010--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_016760_010--Hb_001080_070 Hb_010344_030 Hb_010344_030 Hb_016760_010--Hb_010344_030 Hb_010757_030 Hb_010757_030 Hb_016760_010--Hb_010757_030 Hb_005288_110 Hb_005288_110 Hb_003777_250--Hb_005288_110 Hb_006006_060 Hb_006006_060 Hb_003777_250--Hb_006006_060 Hb_001675_050 Hb_001675_050 Hb_003777_250--Hb_001675_050 Hb_005063_080 Hb_005063_080 Hb_003777_250--Hb_005063_080 Hb_004710_020 Hb_004710_020 Hb_003777_250--Hb_004710_020 Hb_000328_050 Hb_000328_050 Hb_003777_250--Hb_000328_050 Hb_022250_100 Hb_022250_100 Hb_003632_030--Hb_022250_100 Hb_006846_080 Hb_006846_080 Hb_003632_030--Hb_006846_080 Hb_119600_050 Hb_119600_050 Hb_003632_030--Hb_119600_050 Hb_005250_010 Hb_005250_010 Hb_003632_030--Hb_005250_010 Hb_001411_030 Hb_001411_030 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050 Hb_005250_030 Hb_005250_030 Hb_011616_020--Hb_005250_030 Hb_005523_010 Hb_005523_010 Hb_011616_020--Hb_005523_010 Hb_000062_450 Hb_000062_450 Hb_011616_020--Hb_000062_450 Hb_156279_010 Hb_156279_010 Hb_011616_020--Hb_156279_010 Hb_011616_020--Hb_003632_030 Hb_000815_170 Hb_000815_170 Hb_011616_020--Hb_000815_170 Hb_008511_140 Hb_008511_140 Hb_000529_140--Hb_008511_140 Hb_000390_030 Hb_000390_030 Hb_000529_140--Hb_000390_030 Hb_000529_140--Hb_005523_010 Hb_000529_140--Hb_010757_030 Hb_000495_080 Hb_000495_080 Hb_000529_140--Hb_000495_080 Hb_000640_260 Hb_000640_260 Hb_000529_140--Hb_000640_260 Hb_001195_370 Hb_001195_370 Hb_001080_150--Hb_001195_370 Hb_062013_010 Hb_062013_010 Hb_001080_150--Hb_062013_010 Hb_000329_080 Hb_000329_080 Hb_001080_150--Hb_000329_080 Hb_007933_030 Hb_007933_030 Hb_001080_150--Hb_007933_030 Hb_000963_090 Hb_000963_090 Hb_001080_150--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_001080_150--Hb_078477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.563245 1.1953 1.29512 4.12442 1.61537 3.59151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.836718 0.478418 0.643395 2.79292 9.51261

CAGE analysis