Hb_017098_040

Information

Type -
Description -
Location Contig17098: 29712-33839
Sequence    

Annotation

kegg
ID rcu:RCOM_1441620
description Cyclic nucleotide-gated ion channel, putative (EC:2.7.11.12)
nr
ID XP_002512726.1
description Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
swissprot
ID Q9FXH6
description Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2
trembl
ID B9RGL7
description Cyclic nucleotide-gated ion channel, putative OS=Ricinus communis GN=RCOM_1441620 PE=4 SV=1
Gene Ontology
ID GO:0005886
description cyclic nucleotide-gated ion channel 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15976: 30105-30425 , PASA_asmbl_15977: 30947-32697 , PASA_asmbl_15978: 32772-33557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017098_040 0.0 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
2 Hb_004678_010 0.0869264686 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
3 Hb_002675_080 0.1091841724 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
4 Hb_000635_050 0.1100114995 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
5 Hb_000357_070 0.1259018528 - - -
6 Hb_000915_130 0.1307170125 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
7 Hb_000283_140 0.1320051682 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
8 Hb_000099_170 0.1349296891 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
9 Hb_000271_220 0.1355449011 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
10 Hb_034579_020 0.1385447592 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000638_060 0.1391206197 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
12 Hb_002026_030 0.1397914842 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
13 Hb_002909_100 0.1408638977 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
14 Hb_003847_040 0.1409721297 - - adenosine diphosphatase, putative [Ricinus communis]
15 Hb_000322_030 0.1410680128 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
16 Hb_003912_080 0.1411785563 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_001677_040 0.143024281 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
18 Hb_012807_150 0.1443290267 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
19 Hb_003849_160 0.145077879 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
20 Hb_003175_070 0.145144107 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]

Gene co-expression network

sample Hb_017098_040 Hb_017098_040 Hb_004678_010 Hb_004678_010 Hb_017098_040--Hb_004678_010 Hb_002675_080 Hb_002675_080 Hb_017098_040--Hb_002675_080 Hb_000635_050 Hb_000635_050 Hb_017098_040--Hb_000635_050 Hb_000357_070 Hb_000357_070 Hb_017098_040--Hb_000357_070 Hb_000915_130 Hb_000915_130 Hb_017098_040--Hb_000915_130 Hb_000283_140 Hb_000283_140 Hb_017098_040--Hb_000283_140 Hb_003912_080 Hb_003912_080 Hb_004678_010--Hb_003912_080 Hb_002026_030 Hb_002026_030 Hb_004678_010--Hb_002026_030 Hb_004678_010--Hb_000635_050 Hb_001141_060 Hb_001141_060 Hb_004678_010--Hb_001141_060 Hb_004678_010--Hb_002675_080 Hb_000042_050 Hb_000042_050 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070 Hb_002675_080--Hb_002026_030 Hb_000635_050--Hb_000357_070 Hb_000635_050--Hb_002026_030 Hb_007765_130 Hb_007765_130 Hb_000635_050--Hb_007765_130 Hb_003055_070 Hb_003055_070 Hb_000635_050--Hb_003055_070 Hb_034579_020 Hb_034579_020 Hb_000357_070--Hb_034579_020 Hb_000388_080 Hb_000388_080 Hb_000357_070--Hb_000388_080 Hb_002028_110 Hb_002028_110 Hb_000357_070--Hb_002028_110 Hb_000357_070--Hb_002675_080 Hb_000357_070--Hb_000283_140 Hb_000032_410 Hb_000032_410 Hb_000915_130--Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_000915_130--Hb_005357_110 Hb_005511_130 Hb_005511_130 Hb_000915_130--Hb_005511_130 Hb_000042_110 Hb_000042_110 Hb_000915_130--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000915_130--Hb_000260_490 Hb_004730_020 Hb_004730_020 Hb_000915_130--Hb_004730_020 Hb_012807_150 Hb_012807_150 Hb_000283_140--Hb_012807_150 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12371 0.63861 0.988369 1.12186 0.152162 0.0933065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0181978 0.114556 0.109131 0.187687 1.00382

CAGE analysis