Hb_017098_050

Information

Type -
Description -
Location Contig17098: 40496-45396
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03540g
description hypothetical protein
nr
ID XP_006368502.1
description hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID U5GRR4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03540g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017098_050 0.0 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
2 Hb_001109_130 0.0769279043 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
3 Hb_007850_110 0.0844360573 - - MADS-box transcription factor 3 [Hevea brasiliensis]
4 Hb_005496_170 0.0951186045 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
5 Hb_010880_010 0.1040374741 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
6 Hb_000776_020 0.1046767429 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
7 Hb_004943_010 0.1081238655 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_000866_190 0.1183092806 - - transcription factor, putative [Ricinus communis]
9 Hb_004324_320 0.1183729491 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
10 Hb_170023_010 0.1185918429 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
11 Hb_007205_020 0.1193235822 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
12 Hb_002601_140 0.1199206712 - - signal transducer, putative [Ricinus communis]
13 Hb_000147_020 0.1199384844 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
14 Hb_002635_010 0.1221784034 - - homogentisate phytyl transferase [Hevea brasiliensis]
15 Hb_000258_210 0.1225483212 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
16 Hb_003224_010 0.1228225934 - - -
17 Hb_009554_030 0.1236734899 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
18 Hb_006469_090 0.1258573401 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
19 Hb_020805_070 0.1260617627 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
20 Hb_000380_140 0.1261149005 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]

Gene co-expression network

sample Hb_017098_050 Hb_017098_050 Hb_001109_130 Hb_001109_130 Hb_017098_050--Hb_001109_130 Hb_007850_110 Hb_007850_110 Hb_017098_050--Hb_007850_110 Hb_005496_170 Hb_005496_170 Hb_017098_050--Hb_005496_170 Hb_010880_010 Hb_010880_010 Hb_017098_050--Hb_010880_010 Hb_000776_020 Hb_000776_020 Hb_017098_050--Hb_000776_020 Hb_004943_010 Hb_004943_010 Hb_017098_050--Hb_004943_010 Hb_001109_130--Hb_010880_010 Hb_000258_210 Hb_000258_210 Hb_001109_130--Hb_000258_210 Hb_001109_130--Hb_007850_110 Hb_001109_130--Hb_004943_010 Hb_001109_130--Hb_005496_170 Hb_006469_090 Hb_006469_090 Hb_007850_110--Hb_006469_090 Hb_002635_010 Hb_002635_010 Hb_007850_110--Hb_002635_010 Hb_004607_160 Hb_004607_160 Hb_007850_110--Hb_004607_160 Hb_000130_480 Hb_000130_480 Hb_007850_110--Hb_000130_480 Hb_005496_170--Hb_010880_010 Hb_003224_010 Hb_003224_010 Hb_005496_170--Hb_003224_010 Hb_127661_010 Hb_127661_010 Hb_005496_170--Hb_127661_010 Hb_000261_370 Hb_000261_370 Hb_005496_170--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_005496_170--Hb_016637_020 Hb_004122_060 Hb_004122_060 Hb_010880_010--Hb_004122_060 Hb_026144_030 Hb_026144_030 Hb_010880_010--Hb_026144_030 Hb_001153_090 Hb_001153_090 Hb_010880_010--Hb_001153_090 Hb_001301_010 Hb_001301_010 Hb_000776_020--Hb_001301_010 Hb_000776_020--Hb_007850_110 Hb_000416_010 Hb_000416_010 Hb_000776_020--Hb_000416_010 Hb_000442_170 Hb_000442_170 Hb_000776_020--Hb_000442_170 Hb_000776_020--Hb_001109_130 Hb_168319_060 Hb_168319_060 Hb_004943_010--Hb_168319_060 Hb_000836_260 Hb_000836_260 Hb_004943_010--Hb_000836_260 Hb_004943_010--Hb_007850_110 Hb_002622_010 Hb_002622_010 Hb_004943_010--Hb_002622_010 Hb_004943_010--Hb_000258_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0679583 0.125455 0.0938715 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.148612 0.192394

CAGE analysis