Hb_017110_010

Information

Type transcription factor
Description TF Family: TRAF
Location Contig17110: 27910-30960
Sequence    

Annotation

kegg
ID vvi:100243007
description BTB/POZ domain-containing protein At1g55760
nr
ID XP_012078497.1
description PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
swissprot
ID Q680K8
description BTB/POZ domain-containing protein At1g55760 OS=Arabidopsis thaliana GN=At1g55760 PE=2 SV=1
trembl
ID A0A067K8S1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13181 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15994: 27932-30856 , PASA_asmbl_15995: 28064-30765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017110_010 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
2 Hb_000629_120 0.1051079566 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
3 Hb_181288_020 0.1076559935 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
4 Hb_000161_060 0.1117560032 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
5 Hb_003032_010 0.1145740917 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
6 Hb_000138_110 0.118765995 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
7 Hb_000479_200 0.119005001 - - PREDICTED: uncharacterized protein LOC105644128 [Jatropha curcas]
8 Hb_003943_040 0.1202299736 - - DNA binding protein, putative [Ricinus communis]
9 Hb_004738_040 0.1235810461 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
10 Hb_000359_010 0.1236385125 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
11 Hb_002299_060 0.1256638194 transcription factor TF Family: FAR1 PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
12 Hb_032215_050 0.1264165232 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
13 Hb_000085_400 0.1270743013 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
14 Hb_003992_170 0.1294201848 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
15 Hb_000080_190 0.1302585369 - - -
16 Hb_009646_040 0.1311758968 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000749_220 0.1336206695 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
18 Hb_003470_090 0.1370400855 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
19 Hb_004724_080 0.1374100659 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010174_020 0.1380636824 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_017110_010 Hb_017110_010 Hb_000629_120 Hb_000629_120 Hb_017110_010--Hb_000629_120 Hb_181288_020 Hb_181288_020 Hb_017110_010--Hb_181288_020 Hb_000161_060 Hb_000161_060 Hb_017110_010--Hb_000161_060 Hb_003032_010 Hb_003032_010 Hb_017110_010--Hb_003032_010 Hb_000138_110 Hb_000138_110 Hb_017110_010--Hb_000138_110 Hb_000479_200 Hb_000479_200 Hb_017110_010--Hb_000479_200 Hb_000629_120--Hb_000161_060 Hb_000629_120--Hb_000138_110 Hb_000125_100 Hb_000125_100 Hb_000629_120--Hb_000125_100 Hb_092337_010 Hb_092337_010 Hb_000629_120--Hb_092337_010 Hb_000567_120 Hb_000567_120 Hb_000629_120--Hb_000567_120 Hb_001205_150 Hb_001205_150 Hb_000629_120--Hb_001205_150 Hb_000510_320 Hb_000510_320 Hb_181288_020--Hb_000510_320 Hb_000046_320 Hb_000046_320 Hb_181288_020--Hb_000046_320 Hb_004724_080 Hb_004724_080 Hb_181288_020--Hb_004724_080 Hb_003683_160 Hb_003683_160 Hb_181288_020--Hb_003683_160 Hb_000086_400 Hb_000086_400 Hb_181288_020--Hb_000086_400 Hb_000749_220 Hb_000749_220 Hb_181288_020--Hb_000749_220 Hb_000161_060--Hb_001205_150 Hb_010174_020 Hb_010174_020 Hb_000161_060--Hb_010174_020 Hb_000692_220 Hb_000692_220 Hb_000161_060--Hb_000692_220 Hb_000985_060 Hb_000985_060 Hb_000161_060--Hb_000985_060 Hb_000161_060--Hb_092337_010 Hb_000069_110 Hb_000069_110 Hb_003032_010--Hb_000069_110 Hb_010655_010 Hb_010655_010 Hb_003032_010--Hb_010655_010 Hb_002687_110 Hb_002687_110 Hb_003032_010--Hb_002687_110 Hb_003032_010--Hb_000479_200 Hb_032264_110 Hb_032264_110 Hb_003032_010--Hb_032264_110 Hb_000092_010 Hb_000092_010 Hb_000138_110--Hb_000092_010 Hb_004079_030 Hb_004079_030 Hb_000138_110--Hb_004079_030 Hb_000258_270 Hb_000258_270 Hb_000138_110--Hb_000258_270 Hb_000096_010 Hb_000096_010 Hb_000138_110--Hb_000096_010 Hb_002027_040 Hb_002027_040 Hb_000138_110--Hb_002027_040 Hb_003943_040 Hb_003943_040 Hb_000479_200--Hb_003943_040 Hb_011316_040 Hb_011316_040 Hb_000479_200--Hb_011316_040 Hb_001975_140 Hb_001975_140 Hb_000479_200--Hb_001975_140 Hb_000173_290 Hb_000173_290 Hb_000479_200--Hb_000173_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8901 8.21583 9.47864 37.701 27.7962 24.1475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7115 30.4312 60.4256 9.16447 18.2284

CAGE analysis