Hb_017124_010

Information

Type -
Description -
Location Contig17124: 19115-23787
Sequence    

Annotation

kegg
ID rcu:RCOM_0440980
description hypothetical protein
nr
ID XP_002527719.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SP00
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0440980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16018: 20881-22319 , PASA_asmbl_16020: 22812-23787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017124_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004800_160 0.1074387366 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
3 Hb_001141_470 0.1093765405 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
4 Hb_005357_150 0.1134238005 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_012508_040 0.1180022061 - - hypothetical protein POPTR_0006s08460g [Populus trichocarpa]
6 Hb_000861_040 0.12622636 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
7 Hb_005918_030 0.126318583 - - hypothetical protein JCGZ_24769 [Jatropha curcas]
8 Hb_002539_080 0.1269556047 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
9 Hb_003376_120 0.1291160733 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
10 Hb_003408_030 0.1314553513 - - PREDICTED: protein YIF1B [Jatropha curcas]
11 Hb_000419_040 0.1348964149 - - chorismate synthase [Hevea brasiliensis]
12 Hb_007924_020 0.1371938699 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_171554_080 0.1385318748 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
14 Hb_001981_090 0.1417018829 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
15 Hb_012522_030 0.1418126118 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_003787_020 0.1436953615 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
17 Hb_010402_010 0.1439914349 - - BnaC06g23470D [Brassica napus]
18 Hb_001357_140 0.1439952567 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002527_070 0.1444267768 - - axonemal dynein light chain, putative [Ricinus communis]
20 Hb_001439_170 0.1445822031 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_017124_010 Hb_017124_010 Hb_004800_160 Hb_004800_160 Hb_017124_010--Hb_004800_160 Hb_001141_470 Hb_001141_470 Hb_017124_010--Hb_001141_470 Hb_005357_150 Hb_005357_150 Hb_017124_010--Hb_005357_150 Hb_012508_040 Hb_012508_040 Hb_017124_010--Hb_012508_040 Hb_000861_040 Hb_000861_040 Hb_017124_010--Hb_000861_040 Hb_005918_030 Hb_005918_030 Hb_017124_010--Hb_005918_030 Hb_004800_160--Hb_000861_040 Hb_004800_160--Hb_005357_150 Hb_000025_480 Hb_000025_480 Hb_004800_160--Hb_000025_480 Hb_010402_010 Hb_010402_010 Hb_004800_160--Hb_010402_010 Hb_000427_030 Hb_000427_030 Hb_004800_160--Hb_000427_030 Hb_001981_090 Hb_001981_090 Hb_004800_160--Hb_001981_090 Hb_005455_070 Hb_005455_070 Hb_001141_470--Hb_005455_070 Hb_055335_010 Hb_055335_010 Hb_001141_470--Hb_055335_010 Hb_012522_030 Hb_012522_030 Hb_001141_470--Hb_012522_030 Hb_002326_030 Hb_002326_030 Hb_001141_470--Hb_002326_030 Hb_010174_120 Hb_010174_120 Hb_001141_470--Hb_010174_120 Hb_000419_040 Hb_000419_040 Hb_001141_470--Hb_000419_040 Hb_005357_150--Hb_001981_090 Hb_004108_050 Hb_004108_050 Hb_005357_150--Hb_004108_050 Hb_003057_120 Hb_003057_120 Hb_005357_150--Hb_003057_120 Hb_003151_050 Hb_003151_050 Hb_005357_150--Hb_003151_050 Hb_003408_030 Hb_003408_030 Hb_005357_150--Hb_003408_030 Hb_001136_110 Hb_001136_110 Hb_012508_040--Hb_001136_110 Hb_012508_040--Hb_005918_030 Hb_001439_170 Hb_001439_170 Hb_012508_040--Hb_001439_170 Hb_002539_080 Hb_002539_080 Hb_012508_040--Hb_002539_080 Hb_012508_040--Hb_000419_040 Hb_000861_040--Hb_003408_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_007229_060 Hb_007229_060 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100 Hb_005918_030--Hb_002539_080 Hb_009265_060 Hb_009265_060 Hb_005918_030--Hb_009265_060 Hb_005433_040 Hb_005433_040 Hb_005918_030--Hb_005433_040 Hb_002681_110 Hb_002681_110 Hb_005918_030--Hb_002681_110 Hb_005463_020 Hb_005463_020 Hb_005918_030--Hb_005463_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.0906 3.75286 7.23773 5.82515 22.9992 15.4108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.1427 20.0504 58.9304 4.98419 3.81153

CAGE analysis