Hb_017124_020

Information

Type -
Description -
Location Contig17124: 26289-27425
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015539mg
description hypothetical protein
nr
ID XP_007210228.1
description hypothetical protein PRUPE_ppa015539mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5WCD6
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015539mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017124_020 0.0 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
2 Hb_000120_650 0.1294755468 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
3 Hb_004871_050 0.149570588 - - hypothetical protein F383_22684 [Gossypium arboreum]
4 Hb_000972_010 0.1502002767 - - PREDICTED: kinesin KP1 [Jatropha curcas]
5 Hb_000567_250 0.150889752 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
6 Hb_027892_010 0.1679942213 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
7 Hb_000249_090 0.179347969 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
8 Hb_013818_060 0.1892130695 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
9 Hb_000120_120 0.1892998878 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
10 Hb_000249_130 0.1975360464 - - hypothetical protein RCOM_0254640 [Ricinus communis]
11 Hb_000157_040 0.2023285666 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
12 Hb_018954_010 0.2040122644 - - -
13 Hb_002685_090 0.2077342539 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
14 Hb_000193_240 0.2225353363 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
15 Hb_001638_210 0.2227190614 - - conserved hypothetical protein [Ricinus communis]
16 Hb_145226_010 0.2263996448 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
17 Hb_000270_410 0.2283043794 - - -
18 Hb_000003_840 0.2414575534 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
19 Hb_000041_070 0.2417784727 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
20 Hb_003030_080 0.2419869082 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_017124_020 Hb_017124_020 Hb_000120_650 Hb_000120_650 Hb_017124_020--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_017124_020--Hb_004871_050 Hb_000972_010 Hb_000972_010 Hb_017124_020--Hb_000972_010 Hb_000567_250 Hb_000567_250 Hb_017124_020--Hb_000567_250 Hb_027892_010 Hb_027892_010 Hb_017124_020--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_017124_020--Hb_000249_090 Hb_000120_650--Hb_000249_090 Hb_000120_650--Hb_027892_010 Hb_002685_090 Hb_002685_090 Hb_000120_650--Hb_002685_090 Hb_013818_060 Hb_013818_060 Hb_000120_650--Hb_013818_060 Hb_000120_650--Hb_004871_050 Hb_004871_050--Hb_000972_010 Hb_000249_130 Hb_000249_130 Hb_004871_050--Hb_000249_130 Hb_000120_120 Hb_000120_120 Hb_004871_050--Hb_000120_120 Hb_001268_400 Hb_001268_400 Hb_004871_050--Hb_001268_400 Hb_000103_110 Hb_000103_110 Hb_000972_010--Hb_000103_110 Hb_000972_010--Hb_000120_650 Hb_000972_010--Hb_000120_120 Hb_000157_040 Hb_000157_040 Hb_000972_010--Hb_000157_040 Hb_000567_250--Hb_000249_130 Hb_003030_080 Hb_003030_080 Hb_000567_250--Hb_003030_080 Hb_004453_140 Hb_004453_140 Hb_000567_250--Hb_004453_140 Hb_000567_250--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_000567_250--Hb_000041_070 Hb_027892_010--Hb_000249_090 Hb_027892_010--Hb_000120_120 Hb_004705_030 Hb_004705_030 Hb_027892_010--Hb_004705_030 Hb_027892_010--Hb_000249_130 Hb_027892_010--Hb_013818_060 Hb_000249_090--Hb_013818_060 Hb_000249_090--Hb_004705_030 Hb_004048_050 Hb_004048_050 Hb_000249_090--Hb_004048_050 Hb_000249_090--Hb_002685_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34434 0 0 0 0.546133 1.33915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32957 1.37369 6.69337 0.0696454 0

CAGE analysis