Hb_017131_010

Information

Type -
Description -
Location Contig17131: 13-648
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05470g
description POPTRDRAFT_726254; clathrin adaptor complexes medium subunit family protein
nr
ID XP_012085460.1
description PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
swissprot
ID O22715
description AP-1 complex subunit mu-2 OS=Arabidopsis thaliana GN=AP1M2 PE=1 SV=1
trembl
ID A0A067K318
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17798 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-1 complex subunit mu-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017131_010 0.0 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
2 Hb_008232_010 0.0815115939 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
3 Hb_011344_190 0.0931430121 - - PREDICTED: maspardin [Jatropha curcas]
4 Hb_002631_010 0.0933285751 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
5 Hb_004800_100 0.0943847157 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000521_130 0.0947185385 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
7 Hb_000928_110 0.0956779901 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
8 Hb_001123_160 0.0998384025 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_000820_090 0.1011226914 - - -
10 Hb_000173_410 0.1020763755 - - PREDICTED: BI1-like protein [Jatropha curcas]
11 Hb_009193_030 0.1027238647 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
12 Hb_004672_010 0.1038602838 - - ecotropic viral integration site, putative [Ricinus communis]
13 Hb_005488_200 0.1052857202 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
14 Hb_000934_190 0.1066974488 - - SER/ARG-rich protein 34A [Theobroma cacao]
15 Hb_000252_100 0.1083661447 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
16 Hb_000563_200 0.1085829653 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
17 Hb_000538_070 0.1088859685 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
18 Hb_000700_040 0.110260613 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
19 Hb_005765_050 0.1109248963 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
20 Hb_003622_040 0.1109443538 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]

Gene co-expression network

sample Hb_017131_010 Hb_017131_010 Hb_008232_010 Hb_008232_010 Hb_017131_010--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_017131_010--Hb_011344_190 Hb_002631_010 Hb_002631_010 Hb_017131_010--Hb_002631_010 Hb_004800_100 Hb_004800_100 Hb_017131_010--Hb_004800_100 Hb_000521_130 Hb_000521_130 Hb_017131_010--Hb_000521_130 Hb_000928_110 Hb_000928_110 Hb_017131_010--Hb_000928_110 Hb_000982_080 Hb_000982_080 Hb_008232_010--Hb_000982_080 Hb_001123_160 Hb_001123_160 Hb_008232_010--Hb_001123_160 Hb_008232_010--Hb_011344_190 Hb_004672_010 Hb_004672_010 Hb_008232_010--Hb_004672_010 Hb_003622_040 Hb_003622_040 Hb_008232_010--Hb_003622_040 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060 Hb_011344_190--Hb_000982_080 Hb_003376_250 Hb_003376_250 Hb_011344_190--Hb_003376_250 Hb_005488_200 Hb_005488_200 Hb_011344_190--Hb_005488_200 Hb_003633_050 Hb_003633_050 Hb_011344_190--Hb_003633_050 Hb_001222_080 Hb_001222_080 Hb_011344_190--Hb_001222_080 Hb_008245_010 Hb_008245_010 Hb_002631_010--Hb_008245_010 Hb_010560_050 Hb_010560_050 Hb_002631_010--Hb_010560_050 Hb_000094_210 Hb_000094_210 Hb_002631_010--Hb_000094_210 Hb_000700_040 Hb_000700_040 Hb_002631_010--Hb_000700_040 Hb_000025_190 Hb_000025_190 Hb_002631_010--Hb_000025_190 Hb_000252_100 Hb_000252_100 Hb_004800_100--Hb_000252_100 Hb_004627_030 Hb_004627_030 Hb_004800_100--Hb_004627_030 Hb_000300_430 Hb_000300_430 Hb_004800_100--Hb_000300_430 Hb_000173_410 Hb_000173_410 Hb_004800_100--Hb_000173_410 Hb_004800_100--Hb_001123_160 Hb_002045_070 Hb_002045_070 Hb_004800_100--Hb_002045_070 Hb_000212_450 Hb_000212_450 Hb_000521_130--Hb_000212_450 Hb_000521_130--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000521_130--Hb_000140_380 Hb_000521_130--Hb_004800_100 Hb_000521_130--Hb_000173_410 Hb_000928_110--Hb_004800_100 Hb_005356_040 Hb_005356_040 Hb_000928_110--Hb_005356_040 Hb_000928_110--Hb_005488_200 Hb_000928_110--Hb_000700_040 Hb_000928_110--Hb_003376_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.590309 0.927007 1.62272 3.34201 0.653413 1.49637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38203 2.91221 4.11872 2.58803 1.73188

CAGE analysis