Hb_017170_020

Information

Type -
Description -
Location Contig17170: 12364-15413
Sequence    

Annotation

kegg
ID vvi:100267816
description OPA3-like protein
nr
ID XP_012079016.1
description PREDICTED: OPA3-like protein isoform X2 [Jatropha curcas]
swissprot
ID Q9P7W0
description OPA3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.11 PE=3 SV=1
trembl
ID A0A067K9W9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12219 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16080: 14199-15301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017170_020 0.0 - - PREDICTED: OPA3-like protein isoform X2 [Jatropha curcas]
2 Hb_004295_020 0.1062819155 - - thioredoxin II-type 1 [Hevea brasiliensis]
3 Hb_000621_050 0.1191694061 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
4 Hb_052135_030 0.1303104965 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
5 Hb_002498_180 0.1492310897 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
6 Hb_003029_080 0.1504323382 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
7 Hb_001623_330 0.1572447178 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
8 Hb_000260_050 0.1582404523 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
9 Hb_007992_030 0.1587428836 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
10 Hb_033080_010 0.1591919152 - - -
11 Hb_010810_050 0.1602262726 - - hypothetical protein [Cleome spinosa]
12 Hb_119583_010 0.1620026791 - - 60S ribosomal protein L12A [Hevea brasiliensis]
13 Hb_000847_070 0.162232134 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
14 Hb_006816_150 0.1625675881 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
15 Hb_004899_220 0.1638434529 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
16 Hb_004223_230 0.1649873084 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
17 Hb_000977_140 0.1655194894 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
18 Hb_001821_120 0.166202411 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
19 Hb_000236_300 0.1668056735 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
20 Hb_000463_040 0.1668384696 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]

Gene co-expression network

sample Hb_017170_020 Hb_017170_020 Hb_004295_020 Hb_004295_020 Hb_017170_020--Hb_004295_020 Hb_000621_050 Hb_000621_050 Hb_017170_020--Hb_000621_050 Hb_052135_030 Hb_052135_030 Hb_017170_020--Hb_052135_030 Hb_002498_180 Hb_002498_180 Hb_017170_020--Hb_002498_180 Hb_003029_080 Hb_003029_080 Hb_017170_020--Hb_003029_080 Hb_001623_330 Hb_001623_330 Hb_017170_020--Hb_001623_330 Hb_007992_030 Hb_007992_030 Hb_004295_020--Hb_007992_030 Hb_000847_070 Hb_000847_070 Hb_004295_020--Hb_000847_070 Hb_004223_230 Hb_004223_230 Hb_004295_020--Hb_004223_230 Hb_000045_130 Hb_000045_130 Hb_004295_020--Hb_000045_130 Hb_004295_020--Hb_052135_030 Hb_002200_120 Hb_002200_120 Hb_000621_050--Hb_002200_120 Hb_000329_610 Hb_000329_610 Hb_000621_050--Hb_000329_610 Hb_000621_050--Hb_004295_020 Hb_000061_160 Hb_000061_160 Hb_000621_050--Hb_000061_160 Hb_180992_010 Hb_180992_010 Hb_000621_050--Hb_180992_010 Hb_004899_220 Hb_004899_220 Hb_052135_030--Hb_004899_220 Hb_001369_650 Hb_001369_650 Hb_052135_030--Hb_001369_650 Hb_000260_050 Hb_000260_050 Hb_052135_030--Hb_000260_050 Hb_010810_050 Hb_010810_050 Hb_052135_030--Hb_010810_050 Hb_052135_030--Hb_001623_330 Hb_006816_150 Hb_006816_150 Hb_052135_030--Hb_006816_150 Hb_000084_290 Hb_000084_290 Hb_002498_180--Hb_000084_290 Hb_002498_180--Hb_003029_080 Hb_005489_130 Hb_005489_130 Hb_002498_180--Hb_005489_130 Hb_002498_180--Hb_001623_330 Hb_000042_300 Hb_000042_300 Hb_002498_180--Hb_000042_300 Hb_002498_180--Hb_000045_130 Hb_003029_080--Hb_001623_330 Hb_003058_070 Hb_003058_070 Hb_003029_080--Hb_003058_070 Hb_000483_160 Hb_000483_160 Hb_003029_080--Hb_000483_160 Hb_003001_060 Hb_003001_060 Hb_003029_080--Hb_003001_060 Hb_001821_120 Hb_001821_120 Hb_003029_080--Hb_001821_120 Hb_001623_330--Hb_001369_650 Hb_000866_300 Hb_000866_300 Hb_001623_330--Hb_000866_300 Hb_001623_330--Hb_003001_060 Hb_000392_270 Hb_000392_270 Hb_001623_330--Hb_000392_270 Hb_000977_080 Hb_000977_080 Hb_001623_330--Hb_000977_080 Hb_001623_330--Hb_000045_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0534 3.2842 1.83263 2.13117 25.0091 17.8359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99656 28.3214 5.09879 2.59361 0.283125

CAGE analysis