Hb_017193_010

Information

Type -
Description -
Location Contig17193: 8228-14409
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10990g
description POPTRDRAFT_1106960; hypothetical protein
nr
ID XP_012071591.1
description PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q8WV93
description Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=1 SV=2
trembl
ID A0A067L2P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04098 PE=4 SV=1
Gene Ontology
ID GO:0005524
description lactation elevated protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16111: 8311-14415 , PASA_asmbl_16112: 9820-14399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017193_010 0.0 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
2 Hb_002871_040 0.0769086226 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
3 Hb_172979_010 0.0863872226 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
4 Hb_101334_020 0.0956076754 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
5 Hb_001623_500 0.1056948619 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
6 Hb_003835_110 0.1084034451 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
7 Hb_000579_080 0.1084509874 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
8 Hb_000620_020 0.1128039619 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
9 Hb_000926_060 0.1159932398 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000086_270 0.1168352388 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
11 Hb_012633_050 0.116836296 - - zinc finger protein, putative [Ricinus communis]
12 Hb_007217_010 0.1182902494 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
13 Hb_001009_140 0.1194702121 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
14 Hb_006588_190 0.1197961306 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
15 Hb_005332_080 0.1202921678 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
16 Hb_000331_570 0.1223959382 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
17 Hb_008375_030 0.1232671217 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
18 Hb_006438_020 0.1234325525 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
19 Hb_004339_040 0.1248246117 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
20 Hb_005903_020 0.1256136564 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_017193_010 Hb_017193_010 Hb_002871_040 Hb_002871_040 Hb_017193_010--Hb_002871_040 Hb_172979_010 Hb_172979_010 Hb_017193_010--Hb_172979_010 Hb_101334_020 Hb_101334_020 Hb_017193_010--Hb_101334_020 Hb_001623_500 Hb_001623_500 Hb_017193_010--Hb_001623_500 Hb_003835_110 Hb_003835_110 Hb_017193_010--Hb_003835_110 Hb_000579_080 Hb_000579_080 Hb_017193_010--Hb_000579_080 Hb_002871_040--Hb_003835_110 Hb_011381_040 Hb_011381_040 Hb_002871_040--Hb_011381_040 Hb_000620_020 Hb_000620_020 Hb_002871_040--Hb_000620_020 Hb_002627_040 Hb_002627_040 Hb_002871_040--Hb_002627_040 Hb_002871_040--Hb_000579_080 Hb_012633_050 Hb_012633_050 Hb_172979_010--Hb_012633_050 Hb_000076_210 Hb_000076_210 Hb_172979_010--Hb_000076_210 Hb_003687_120 Hb_003687_120 Hb_172979_010--Hb_003687_120 Hb_000120_890 Hb_000120_890 Hb_172979_010--Hb_000120_890 Hb_000160_140 Hb_000160_140 Hb_172979_010--Hb_000160_140 Hb_000230_530 Hb_000230_530 Hb_101334_020--Hb_000230_530 Hb_001390_100 Hb_001390_100 Hb_101334_020--Hb_001390_100 Hb_003529_040 Hb_003529_040 Hb_101334_020--Hb_003529_040 Hb_001009_140 Hb_001009_140 Hb_101334_020--Hb_001009_140 Hb_009296_020 Hb_009296_020 Hb_101334_020--Hb_009296_020 Hb_004339_040 Hb_004339_040 Hb_001623_500--Hb_004339_040 Hb_001832_200 Hb_001832_200 Hb_001623_500--Hb_001832_200 Hb_007199_020 Hb_007199_020 Hb_001623_500--Hb_007199_020 Hb_187247_020 Hb_187247_020 Hb_001623_500--Hb_187247_020 Hb_001623_500--Hb_000579_080 Hb_003835_110--Hb_011381_040 Hb_019654_050 Hb_019654_050 Hb_003835_110--Hb_019654_050 Hb_002027_320 Hb_002027_320 Hb_003835_110--Hb_002027_320 Hb_006588_190 Hb_006588_190 Hb_003835_110--Hb_006588_190 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_000579_080--Hb_012633_050 Hb_000229_050 Hb_000229_050 Hb_000579_080--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_000579_080--Hb_008206_080 Hb_008304_020 Hb_008304_020 Hb_000579_080--Hb_008304_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87244 6.26159 22.4218 6.00139 3.49213 2.51648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.57006 4.4531 3.67133 8.60941 10.2819

CAGE analysis