Hb_017214_040

Information

Type -
Description -
Location Contig17214: 67059-76765
Sequence    

Annotation

kegg
ID rcu:RCOM_0002700
description ubiquitin ligase protein cop1, putative (EC:1.3.1.74)
nr
ID XP_012080652.1
description PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
swissprot
ID P43254
description E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2
trembl
ID A0A067KEZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13758 PE=4 SV=1
Gene Ontology
ID GO:0000152
description e3 ubiquitin-protein ligase cop1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16219: 67132-76585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017214_040 0.0 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
2 Hb_000179_190 0.0531541573 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
3 Hb_008387_010 0.071364182 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
4 Hb_023226_070 0.0724367828 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000445_060 0.0741474103 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
6 Hb_000227_270 0.0761856589 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
7 Hb_000110_350 0.0775239423 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
8 Hb_000806_030 0.0805523298 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
9 Hb_003918_030 0.0825283451 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
10 Hb_001776_020 0.0829439694 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
11 Hb_001699_010 0.0832100219 - - drought-inducible protein [Manihot esculenta]
12 Hb_088584_010 0.0840239205 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
13 Hb_000103_340 0.0844095642 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
14 Hb_027905_020 0.0846568006 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
15 Hb_003929_210 0.0850673438 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_002811_040 0.0873066797 - - 5'->3' exoribonuclease, putative [Ricinus communis]
17 Hb_000977_300 0.0873788068 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
18 Hb_000975_210 0.0880925107 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
19 Hb_010287_020 0.0899859076 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
20 Hb_087313_010 0.0901551282 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_017214_040 Hb_017214_040 Hb_000179_190 Hb_000179_190 Hb_017214_040--Hb_000179_190 Hb_008387_010 Hb_008387_010 Hb_017214_040--Hb_008387_010 Hb_023226_070 Hb_023226_070 Hb_017214_040--Hb_023226_070 Hb_000445_060 Hb_000445_060 Hb_017214_040--Hb_000445_060 Hb_000227_270 Hb_000227_270 Hb_017214_040--Hb_000227_270 Hb_000110_350 Hb_000110_350 Hb_017214_040--Hb_000110_350 Hb_000179_190--Hb_000110_350 Hb_000179_190--Hb_000445_060 Hb_003929_210 Hb_003929_210 Hb_000179_190--Hb_003929_210 Hb_005305_100 Hb_005305_100 Hb_000179_190--Hb_005305_100 Hb_170077_010 Hb_170077_010 Hb_000179_190--Hb_170077_010 Hb_000457_230 Hb_000457_230 Hb_008387_010--Hb_000457_230 Hb_002811_040 Hb_002811_040 Hb_008387_010--Hb_002811_040 Hb_000205_130 Hb_000205_130 Hb_008387_010--Hb_000205_130 Hb_002615_120 Hb_002615_120 Hb_008387_010--Hb_002615_120 Hb_026234_010 Hb_026234_010 Hb_008387_010--Hb_026234_010 Hb_060094_020 Hb_060094_020 Hb_023226_070--Hb_060094_020 Hb_000094_090 Hb_000094_090 Hb_023226_070--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_023226_070--Hb_001754_030 Hb_023226_070--Hb_000445_060 Hb_000723_110 Hb_000723_110 Hb_023226_070--Hb_000723_110 Hb_023226_070--Hb_002811_040 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_007290_030 Hb_007290_030 Hb_000227_270--Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_000227_270--Hb_000352_350 Hb_000227_270--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_000227_270--Hb_004943_030 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500 Hb_000110_350--Hb_170077_010 Hb_000110_350--Hb_003929_210 Hb_000110_350--Hb_002768_050 Hb_000110_350--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2883 19.94 19.9679 13.8667 8.00102 10.7596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.49558 5.84385 7.93135 7.38707 15.6646

CAGE analysis