Hb_017214_050

Information

Type -
Description -
Location Contig17214: 79782-91047
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9RK74
description Uncharacterized protein OS=Morus notabilis GN=L484_001429 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017214_050 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_002027_370 0.0022753172 - - conserved hypothetical protein [Ricinus communis]
3 Hb_074683_010 0.0300795746 - - -
4 Hb_001994_010 0.1273410152 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_015836_010 0.1326349479 - - -
6 Hb_005389_130 0.1965721982 - - hypothetical protein CICLE_v10009852mg [Citrus clementina]
7 Hb_001066_010 0.2925005803 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_033594_010 0.2987669129 - - -
9 Hb_000445_240 0.3209758225 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000976_370 0.3319105584 - - beta-glucosidase, putative [Ricinus communis]
11 Hb_120112_010 0.3319412698 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_008689_020 0.3320004171 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010803_010 0.3343911979 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_028271_010 0.3356694891 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
15 Hb_001221_460 0.3444293245 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_017170_010 0.3638563865 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
17 Hb_010232_010 0.3694389525 - - -
18 Hb_106496_010 0.3772225433 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
19 Hb_000622_320 0.3781395966 - - PREDICTED: chitinase 1-like [Vitis vinifera]
20 Hb_002641_110 0.3866144406 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]

Gene co-expression network

sample Hb_017214_050 Hb_017214_050 Hb_002027_370 Hb_002027_370 Hb_017214_050--Hb_002027_370 Hb_074683_010 Hb_074683_010 Hb_017214_050--Hb_074683_010 Hb_001994_010 Hb_001994_010 Hb_017214_050--Hb_001994_010 Hb_015836_010 Hb_015836_010 Hb_017214_050--Hb_015836_010 Hb_005389_130 Hb_005389_130 Hb_017214_050--Hb_005389_130 Hb_001066_010 Hb_001066_010 Hb_017214_050--Hb_001066_010 Hb_002027_370--Hb_074683_010 Hb_002027_370--Hb_001994_010 Hb_002027_370--Hb_015836_010 Hb_002027_370--Hb_005389_130 Hb_002027_370--Hb_001066_010 Hb_074683_010--Hb_001994_010 Hb_074683_010--Hb_015836_010 Hb_074683_010--Hb_005389_130 Hb_033594_010 Hb_033594_010 Hb_074683_010--Hb_033594_010 Hb_001994_010--Hb_005389_130 Hb_001994_010--Hb_015836_010 Hb_001994_010--Hb_033594_010 Hb_015836_010--Hb_005389_130 Hb_106496_010 Hb_106496_010 Hb_015836_010--Hb_106496_010 Hb_012654_030 Hb_012654_030 Hb_005389_130--Hb_012654_030 Hb_000622_320 Hb_000622_320 Hb_001066_010--Hb_000622_320 Hb_001066_010--Hb_074683_010 Hb_001066_010--Hb_015836_010 Hb_001066_010--Hb_001994_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0119371 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0213716 0 0.00851749 0

CAGE analysis