Hb_017224_030

Information

Type -
Description -
Location Contig17224: 15361-22589
Sequence    

Annotation

kegg
ID rcu:RCOM_1448750
description ubiquitin-protein ligase, putative
nr
ID XP_012067219.1
description PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
swissprot
ID P21298
description Late embryogenesis abundant protein OS=Raphanus sativus PE=2 SV=1
trembl
ID A0A067L029
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26775 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16242: 15178-16086 , PASA_asmbl_16243: 16529-22530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017224_030 0.0 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
2 Hb_011883_010 0.0384329557 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
3 Hb_000035_320 0.0718564362 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
4 Hb_002685_110 0.0726900914 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
5 Hb_005291_030 0.0727310436 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
6 Hb_003092_040 0.0738841829 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
7 Hb_000059_330 0.0746336071 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
8 Hb_007416_280 0.0770749069 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003761_010 0.0785712654 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_000953_020 0.0792443816 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
11 Hb_000510_130 0.0805285661 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
12 Hb_007441_200 0.0836134791 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
13 Hb_002107_030 0.0837807604 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
14 Hb_020956_020 0.0842788692 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
15 Hb_003057_100 0.0847960118 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
16 Hb_002303_070 0.084974601 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
17 Hb_005663_060 0.0855102178 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
18 Hb_000571_120 0.0859054665 - - importin beta-1, putative [Ricinus communis]
19 Hb_001638_170 0.0859932332 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
20 Hb_032202_190 0.0863609468 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]

Gene co-expression network

sample Hb_017224_030 Hb_017224_030 Hb_011883_010 Hb_011883_010 Hb_017224_030--Hb_011883_010 Hb_000035_320 Hb_000035_320 Hb_017224_030--Hb_000035_320 Hb_002685_110 Hb_002685_110 Hb_017224_030--Hb_002685_110 Hb_005291_030 Hb_005291_030 Hb_017224_030--Hb_005291_030 Hb_003092_040 Hb_003092_040 Hb_017224_030--Hb_003092_040 Hb_000059_330 Hb_000059_330 Hb_017224_030--Hb_000059_330 Hb_011883_010--Hb_005291_030 Hb_000571_120 Hb_000571_120 Hb_011883_010--Hb_000571_120 Hb_003057_100 Hb_003057_100 Hb_011883_010--Hb_003057_100 Hb_011671_430 Hb_011671_430 Hb_011883_010--Hb_011671_430 Hb_000953_020 Hb_000953_020 Hb_011883_010--Hb_000953_020 Hb_000976_410 Hb_000976_410 Hb_000035_320--Hb_000976_410 Hb_000671_050 Hb_000671_050 Hb_000035_320--Hb_000671_050 Hb_148644_010 Hb_148644_010 Hb_000035_320--Hb_148644_010 Hb_002835_080 Hb_002835_080 Hb_000035_320--Hb_002835_080 Hb_001538_130 Hb_001538_130 Hb_000035_320--Hb_001538_130 Hb_004032_150 Hb_004032_150 Hb_000035_320--Hb_004032_150 Hb_000249_070 Hb_000249_070 Hb_002685_110--Hb_000249_070 Hb_003761_010 Hb_003761_010 Hb_002685_110--Hb_003761_010 Hb_002685_110--Hb_005291_030 Hb_002473_130 Hb_002473_130 Hb_002685_110--Hb_002473_130 Hb_002685_110--Hb_000035_320 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_005291_030--Hb_002473_130 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_096563_010 Hb_096563_010 Hb_000059_330--Hb_096563_010 Hb_001259_090 Hb_001259_090 Hb_000059_330--Hb_001259_090 Hb_003428_030 Hb_003428_030 Hb_000059_330--Hb_003428_030 Hb_000059_330--Hb_003092_040 Hb_024071_020 Hb_024071_020 Hb_000059_330--Hb_024071_020 Hb_004310_130 Hb_004310_130 Hb_000059_330--Hb_004310_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5949 17.3298 10.5557 16.229 12.5778 24.5099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6099 23.8476 19.7308 15.2377 12.1085

CAGE analysis