Hb_017225_020

Information

Type -
Description -
Location Contig17225: 22283-22989
Sequence    

Annotation

kegg
ID rcu:RCOM_0230700
description Protein BRICK1, putative
nr
ID XP_012492064.1
description PREDICTED: protein BRICK 1 [Gossypium raimondii]
swissprot
ID Q94JY4
description Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1
trembl
ID A0A0D2TJZ7
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G230500 PE=4 SV=1
Gene Ontology
ID GO:0005856
description protein brick 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16248: 22110-22837
cDNA
(Sanger)
(ID:Location)		 036_N16.ab1: 22275-22837 , 040_A20.ab1: 22274-22824

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017225_020 0.0 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
2 Hb_005446_010 0.0639424534 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
3 Hb_027654_050 0.0663888655 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
4 Hb_007576_170 0.0705614588 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000329_200 0.0711232154 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
6 Hb_010361_010 0.0737799685 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
7 Hb_028872_080 0.0755345517 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
8 Hb_002110_200 0.0770297932 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_001604_060 0.0784434656 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
10 Hb_001776_160 0.0815852226 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
11 Hb_004324_270 0.0823497722 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
12 Hb_011512_040 0.0828706513 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
13 Hb_000827_050 0.0828810423 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
14 Hb_002183_060 0.0834648025 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
15 Hb_000841_020 0.0841998593 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
16 Hb_000431_070 0.0842742347 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
17 Hb_001268_420 0.0848067864 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
18 Hb_001512_030 0.0864952319 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
19 Hb_000789_230 0.0870335995 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
20 Hb_004889_010 0.0877216405 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]

Gene co-expression network

sample Hb_017225_020 Hb_017225_020 Hb_005446_010 Hb_005446_010 Hb_017225_020--Hb_005446_010 Hb_027654_050 Hb_027654_050 Hb_017225_020--Hb_027654_050 Hb_007576_170 Hb_007576_170 Hb_017225_020--Hb_007576_170 Hb_000329_200 Hb_000329_200 Hb_017225_020--Hb_000329_200 Hb_010361_010 Hb_010361_010 Hb_017225_020--Hb_010361_010 Hb_028872_080 Hb_028872_080 Hb_017225_020--Hb_028872_080 Hb_004324_270 Hb_004324_270 Hb_005446_010--Hb_004324_270 Hb_000827_050 Hb_000827_050 Hb_005446_010--Hb_000827_050 Hb_011512_040 Hb_011512_040 Hb_005446_010--Hb_011512_040 Hb_000327_060 Hb_000327_060 Hb_005446_010--Hb_000327_060 Hb_003768_030 Hb_003768_030 Hb_005446_010--Hb_003768_030 Hb_001776_160 Hb_001776_160 Hb_027654_050--Hb_001776_160 Hb_001512_080 Hb_001512_080 Hb_027654_050--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_027654_050--Hb_002110_200 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_000254_050 Hb_000254_050 Hb_027654_050--Hb_000254_050 Hb_004459_040 Hb_004459_040 Hb_007576_170--Hb_004459_040 Hb_000431_070 Hb_000431_070 Hb_007576_170--Hb_000431_070 Hb_002798_020 Hb_002798_020 Hb_007576_170--Hb_002798_020 Hb_033153_060 Hb_033153_060 Hb_007576_170--Hb_033153_060 Hb_006541_010 Hb_006541_010 Hb_007576_170--Hb_006541_010 Hb_000329_200--Hb_010361_010 Hb_024650_070 Hb_024650_070 Hb_000329_200--Hb_024650_070 Hb_001662_150 Hb_001662_150 Hb_000329_200--Hb_001662_150 Hb_001604_060 Hb_001604_060 Hb_000329_200--Hb_001604_060 Hb_000656_240 Hb_000656_240 Hb_000329_200--Hb_000656_240 Hb_000566_120 Hb_000566_120 Hb_010361_010--Hb_000566_120 Hb_010361_010--Hb_024650_070 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_000045_310 Hb_000045_310 Hb_010361_010--Hb_000045_310 Hb_026889_030 Hb_026889_030 Hb_028872_080--Hb_026889_030 Hb_006831_120 Hb_006831_120 Hb_028872_080--Hb_006831_120 Hb_028872_080--Hb_010361_010 Hb_118419_010 Hb_118419_010 Hb_028872_080--Hb_118419_010 Hb_028872_080--Hb_001604_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.0391 13.0331 37.463 34.2594 31.9039 33.0454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.2895 90.0883 66.3902 43.1644 44.5068

CAGE analysis