Hb_017259_010

Information

Type -
Description -
Location Contig17259: 655-3999
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017259_010 0.0 - - -
2 Hb_009838_130 0.0713812568 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
3 Hb_001158_220 0.0857998917 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
4 Hb_007643_050 0.0858676215 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_025236_040 0.0862888086 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004447_030 0.0889274789 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
7 Hb_000529_080 0.1002237485 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
8 Hb_000116_110 0.1016137893 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
9 Hb_001951_260 0.1023918892 - - 60S ribosomal protein L32, putative [Ricinus communis]
10 Hb_004109_060 0.1034960066 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
11 Hb_141532_010 0.1039040582 - - PREDICTED: protein SMG9-like [Jatropha curcas]
12 Hb_000106_130 0.1064972482 - - unnamed protein product [Vitis vinifera]
13 Hb_002475_160 0.1070985386 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
14 Hb_011848_010 0.1073470885 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
15 Hb_000261_110 0.1076986041 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
16 Hb_001380_020 0.1078244229 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
17 Hb_001616_090 0.1080302598 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
18 Hb_011942_080 0.1081129084 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
19 Hb_001357_380 0.111209095 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_009222_010 0.1122028043 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_017259_010 Hb_017259_010 Hb_009838_130 Hb_009838_130 Hb_017259_010--Hb_009838_130 Hb_001158_220 Hb_001158_220 Hb_017259_010--Hb_001158_220 Hb_007643_050 Hb_007643_050 Hb_017259_010--Hb_007643_050 Hb_025236_040 Hb_025236_040 Hb_017259_010--Hb_025236_040 Hb_004447_030 Hb_004447_030 Hb_017259_010--Hb_004447_030 Hb_000529_080 Hb_000529_080 Hb_017259_010--Hb_000529_080 Hb_002411_180 Hb_002411_180 Hb_009838_130--Hb_002411_180 Hb_008518_050 Hb_008518_050 Hb_009838_130--Hb_008518_050 Hb_004374_150 Hb_004374_150 Hb_009838_130--Hb_004374_150 Hb_009838_130--Hb_000529_080 Hb_009838_130--Hb_007643_050 Hb_005016_170 Hb_005016_170 Hb_001158_220--Hb_005016_170 Hb_002475_160 Hb_002475_160 Hb_001158_220--Hb_002475_160 Hb_001158_220--Hb_007643_050 Hb_061908_010 Hb_061908_010 Hb_001158_220--Hb_061908_010 Hb_002107_160 Hb_002107_160 Hb_001158_220--Hb_002107_160 Hb_001380_020 Hb_001380_020 Hb_001158_220--Hb_001380_020 Hb_007643_050--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007643_050--Hb_011942_080 Hb_001616_090 Hb_001616_090 Hb_007643_050--Hb_001616_090 Hb_000116_110 Hb_000116_110 Hb_007643_050--Hb_000116_110 Hb_031091_010 Hb_031091_010 Hb_007643_050--Hb_031091_010 Hb_001951_260 Hb_001951_260 Hb_025236_040--Hb_001951_260 Hb_000084_290 Hb_000084_290 Hb_025236_040--Hb_000084_290 Hb_000621_060 Hb_000621_060 Hb_025236_040--Hb_000621_060 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_025236_040--Hb_000290_020 Hb_000205_120 Hb_000205_120 Hb_004447_030--Hb_000205_120 Hb_001663_110 Hb_001663_110 Hb_004447_030--Hb_001663_110 Hb_000976_270 Hb_000976_270 Hb_004447_030--Hb_000976_270 Hb_000347_080 Hb_000347_080 Hb_004447_030--Hb_000347_080 Hb_000265_150 Hb_000265_150 Hb_004447_030--Hb_000265_150 Hb_004447_030--Hb_000529_080 Hb_000529_080--Hb_000205_120 Hb_000058_040 Hb_000058_040 Hb_000529_080--Hb_000058_040 Hb_000529_080--Hb_000265_150 Hb_008887_050 Hb_008887_050 Hb_000529_080--Hb_008887_050 Hb_000529_080--Hb_000976_270 Hb_031939_010 Hb_031939_010 Hb_000529_080--Hb_031939_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.935 5.75679 5.15829 4.91385 11.3926 14.3559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84927 8.03167 1.79884 2.64085 1.24943

CAGE analysis