Hb_017358_030

Information

Type transcription factor
Description TF Family: FAR1
Location Contig17358: 28591-31310
Sequence    

Annotation

kegg
ID rcu:RCOM_0347240
description hypothetical protein
nr
ID XP_002530218.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LKR4
description Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2
trembl
ID B9SW49
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0347240 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16519: 29794-30889 , PASA_asmbl_16520: 31058-32376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017358_030 0.0 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
2 Hb_000165_250 0.0595935196 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
3 Hb_000866_260 0.0634707929 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
4 Hb_007389_010 0.0655743431 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
5 Hb_002739_100 0.0661366406 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
6 Hb_000029_050 0.0676430205 - - expressed protein, putative [Ricinus communis]
7 Hb_000917_060 0.0678875042 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
8 Hb_004724_080 0.0679467338 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002888_030 0.0706107361 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
10 Hb_027295_050 0.0713977078 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
11 Hb_000329_320 0.0715448685 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
12 Hb_002110_150 0.0733431742 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
13 Hb_009767_110 0.074206546 - - -
14 Hb_001242_060 0.0760089121 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
15 Hb_000416_040 0.0760279876 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
16 Hb_005779_060 0.0772837826 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
17 Hb_008554_030 0.0781675065 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
18 Hb_000684_470 0.0782082891 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
19 Hb_000866_010 0.0788128619 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005496_130 0.0789513963 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_017358_030 Hb_017358_030 Hb_000165_250 Hb_000165_250 Hb_017358_030--Hb_000165_250 Hb_000866_260 Hb_000866_260 Hb_017358_030--Hb_000866_260 Hb_007389_010 Hb_007389_010 Hb_017358_030--Hb_007389_010 Hb_002739_100 Hb_002739_100 Hb_017358_030--Hb_002739_100 Hb_000029_050 Hb_000029_050 Hb_017358_030--Hb_000029_050 Hb_000917_060 Hb_000917_060 Hb_017358_030--Hb_000917_060 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_005496_130 Hb_005496_130 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050 Hb_000866_260--Hb_000917_060 Hb_000866_260--Hb_007389_010 Hb_002013_020 Hb_002013_020 Hb_000866_260--Hb_002013_020 Hb_000329_320 Hb_000329_320 Hb_000866_260--Hb_000329_320 Hb_000753_240 Hb_000753_240 Hb_000866_260--Hb_000753_240 Hb_000614_160 Hb_000614_160 Hb_007389_010--Hb_000614_160 Hb_000866_010 Hb_000866_010 Hb_007389_010--Hb_000866_010 Hb_002235_250 Hb_002235_250 Hb_007389_010--Hb_002235_250 Hb_032264_070 Hb_032264_070 Hb_007389_010--Hb_032264_070 Hb_000876_070 Hb_000876_070 Hb_002739_100--Hb_000876_070 Hb_005779_060 Hb_005779_060 Hb_002739_100--Hb_005779_060 Hb_007691_030 Hb_007691_030 Hb_002739_100--Hb_007691_030 Hb_001242_060 Hb_001242_060 Hb_002739_100--Hb_001242_060 Hb_000928_210 Hb_000928_210 Hb_002739_100--Hb_000928_210 Hb_031527_040 Hb_031527_040 Hb_002739_100--Hb_031527_040 Hb_000029_050--Hb_004221_020 Hb_005993_050 Hb_005993_050 Hb_000029_050--Hb_005993_050 Hb_023386_020 Hb_023386_020 Hb_000029_050--Hb_023386_020 Hb_005779_080 Hb_005779_080 Hb_000029_050--Hb_005779_080 Hb_001409_020 Hb_001409_020 Hb_000029_050--Hb_001409_020 Hb_000917_060--Hb_000329_320 Hb_032202_140 Hb_032202_140 Hb_000917_060--Hb_032202_140 Hb_001163_050 Hb_001163_050 Hb_000917_060--Hb_001163_050 Hb_000917_060--Hb_002013_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.61164 4.51788 4.45498 3.46151 5.92387 5.80433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.55136 7.80141 8.01947 3.41681 5.72168

CAGE analysis