Hb_017358_070

Information

Type -
Description -
Location Contig17358: 52082-55710
Sequence    

Annotation

kegg
ID rcu:RCOM_0346860
description snf1-kinase beta subunit, plants, putative
nr
ID XP_002530210.1
description snf1-kinase beta subunit, plants, putative [Ricinus communis]
swissprot
ID Q9SCY5
description SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
trembl
ID B9SW41
description Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_0346860 PE=4 SV=1
Gene Ontology
ID GO:0005515
description snf1-kinase beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16527: 55429-56359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017358_070 0.0 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
2 Hb_047418_010 0.1804521104 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
3 Hb_005563_010 0.1839885054 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
4 Hb_005144_120 0.1847326651 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
5 Hb_000328_010 0.1856700661 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
6 Hb_004236_040 0.1928319003 - - biotin carboxyl carrier protein [Vernicia fordii]
7 Hb_003197_010 0.2005795595 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000991_020 0.2024772679 - - amino acid transporter, putative [Ricinus communis]
9 Hb_001227_070 0.2037747031 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
10 Hb_000477_040 0.2052516836 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004041_050 0.2062249573 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
12 Hb_000445_120 0.2062596095 - - ATP binding protein, putative [Ricinus communis]
13 Hb_008725_080 0.2085093783 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
14 Hb_000108_240 0.210906972 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
15 Hb_000086_210 0.2153488385 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_011004_050 0.2171699436 - - PREDICTED: kinesin-13A [Jatropha curcas]
17 Hb_000516_050 0.2172896505 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
18 Hb_019837_040 0.2182502831 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
19 Hb_000649_040 0.2188469118 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
20 Hb_006153_150 0.2192865481 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]

Gene co-expression network

sample Hb_017358_070 Hb_017358_070 Hb_047418_010 Hb_047418_010 Hb_017358_070--Hb_047418_010 Hb_005563_010 Hb_005563_010 Hb_017358_070--Hb_005563_010 Hb_005144_120 Hb_005144_120 Hb_017358_070--Hb_005144_120 Hb_000328_010 Hb_000328_010 Hb_017358_070--Hb_000328_010 Hb_004236_040 Hb_004236_040 Hb_017358_070--Hb_004236_040 Hb_003197_010 Hb_003197_010 Hb_017358_070--Hb_003197_010 Hb_047418_010--Hb_004236_040 Hb_000019_080 Hb_000019_080 Hb_047418_010--Hb_000019_080 Hb_058620_080 Hb_058620_080 Hb_047418_010--Hb_058620_080 Hb_003948_020 Hb_003948_020 Hb_047418_010--Hb_003948_020 Hb_004650_050 Hb_004650_050 Hb_047418_010--Hb_004650_050 Hb_000442_070 Hb_000442_070 Hb_047418_010--Hb_000442_070 Hb_001976_030 Hb_001976_030 Hb_005563_010--Hb_001976_030 Hb_000049_180 Hb_000049_180 Hb_005563_010--Hb_000049_180 Hb_000086_210 Hb_000086_210 Hb_005563_010--Hb_000086_210 Hb_001369_100 Hb_001369_100 Hb_005563_010--Hb_001369_100 Hb_000139_300 Hb_000139_300 Hb_005563_010--Hb_000139_300 Hb_001628_120 Hb_001628_120 Hb_005563_010--Hb_001628_120 Hb_005144_120--Hb_000086_210 Hb_011004_050 Hb_011004_050 Hb_005144_120--Hb_011004_050 Hb_008179_030 Hb_008179_030 Hb_005144_120--Hb_008179_030 Hb_009222_110 Hb_009222_110 Hb_005144_120--Hb_009222_110 Hb_005144_120--Hb_000328_010 Hb_005144_120--Hb_005563_010 Hb_006153_160 Hb_006153_160 Hb_000328_010--Hb_006153_160 Hb_000193_340 Hb_000193_340 Hb_000328_010--Hb_000193_340 Hb_002498_030 Hb_002498_030 Hb_000328_010--Hb_002498_030 Hb_000328_010--Hb_000086_210 Hb_017439_010 Hb_017439_010 Hb_000328_010--Hb_017439_010 Hb_004236_040--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_004236_040--Hb_002411_100 Hb_004236_040--Hb_000019_080 Hb_004236_040--Hb_058620_080 Hb_005563_040 Hb_005563_040 Hb_004236_040--Hb_005563_040 Hb_000077_360 Hb_000077_360 Hb_003197_010--Hb_000077_360 Hb_004102_010 Hb_004102_010 Hb_003197_010--Hb_004102_010 Hb_001488_190 Hb_001488_190 Hb_003197_010--Hb_001488_190 Hb_000477_040 Hb_000477_040 Hb_003197_010--Hb_000477_040 Hb_000445_120 Hb_000445_120 Hb_003197_010--Hb_000445_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.701986 0.210312 5.26124 5.49873 0.0751711 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.920674 1.11012 2.63576 0.136431 5.85318

CAGE analysis