Hb_017387_010

Information

Type -
Description -
Location Contig17387: 14292-30612
Sequence    

Annotation

kegg
ID pop:POPTR_0004s19340g
description POPTRDRAFT_1077146; kinase family protein
nr
ID XP_012087677.1
description PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
swissprot
ID Q944A7
description Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1
trembl
ID A0A067JLJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25333 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at4g35230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16539: 15957-30482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017387_010 0.0 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
2 Hb_006452_120 0.0709356303 - - PREDICTED: protein FAM188A [Jatropha curcas]
3 Hb_001221_430 0.074531763 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
4 Hb_003544_030 0.0755322293 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
5 Hb_000574_450 0.0764553117 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
6 Hb_001434_080 0.077272147 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
7 Hb_000962_030 0.077374872 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
8 Hb_029243_030 0.0780008307 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
9 Hb_003688_180 0.0810534342 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
10 Hb_005663_110 0.0813558852 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
11 Hb_004781_010 0.0814667773 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
12 Hb_003776_060 0.0839988815 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
13 Hb_000215_320 0.085187997 - - phosphofructokinase [Hevea brasiliensis]
14 Hb_003906_200 0.0852511078 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
15 Hb_002982_020 0.0875149347 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
16 Hb_004030_080 0.0880013174 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
17 Hb_000487_270 0.0894374573 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
18 Hb_000778_010 0.090381869 - - hypothetical protein [Bacillus subtilis]
19 Hb_001500_140 0.0906362498 - - pelota, putative [Ricinus communis]
20 Hb_000753_230 0.0907952835 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_017387_010 Hb_017387_010 Hb_006452_120 Hb_006452_120 Hb_017387_010--Hb_006452_120 Hb_001221_430 Hb_001221_430 Hb_017387_010--Hb_001221_430 Hb_003544_030 Hb_003544_030 Hb_017387_010--Hb_003544_030 Hb_000574_450 Hb_000574_450 Hb_017387_010--Hb_000574_450 Hb_001434_080 Hb_001434_080 Hb_017387_010--Hb_001434_080 Hb_000962_030 Hb_000962_030 Hb_017387_010--Hb_000962_030 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_000173_280 Hb_000173_280 Hb_001221_430--Hb_000173_280 Hb_002456_010 Hb_002456_010 Hb_001221_430--Hb_002456_010 Hb_001359_050 Hb_001359_050 Hb_001221_430--Hb_001359_050 Hb_000107_660 Hb_000107_660 Hb_001221_430--Hb_000107_660 Hb_000460_080 Hb_000460_080 Hb_001221_430--Hb_000460_080 Hb_000327_250 Hb_000327_250 Hb_003544_030--Hb_000327_250 Hb_005663_110 Hb_005663_110 Hb_003544_030--Hb_005663_110 Hb_003544_030--Hb_001434_080 Hb_016347_010 Hb_016347_010 Hb_003544_030--Hb_016347_010 Hb_003544_030--Hb_006452_120 Hb_029243_030 Hb_029243_030 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_000574_450--Hb_010515_020 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140 Hb_001434_080--Hb_005663_110 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_002989_020 Hb_002989_020 Hb_001434_080--Hb_002989_020 Hb_001434_080--Hb_000327_250 Hb_002110_080 Hb_002110_080 Hb_000962_030--Hb_002110_080 Hb_001114_110 Hb_001114_110 Hb_000962_030--Hb_001114_110 Hb_001481_060 Hb_001481_060 Hb_000962_030--Hb_001481_060 Hb_007248_030 Hb_007248_030 Hb_000962_030--Hb_007248_030 Hb_004705_170 Hb_004705_170 Hb_000962_030--Hb_004705_170 Hb_001405_210 Hb_001405_210 Hb_000962_030--Hb_001405_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.33366 11.1145 6.18229 13.347 5.22252 7.18326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.70145 9.69793 7.47444 11.6018 6.75753

CAGE analysis