Hb_017413_010

Information

Type -
Description -
Location Contig17413: 727-2313
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017413_010 0.0 - - -
2 Hb_000789_230 0.0698647876 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
3 Hb_000331_450 0.0710261816 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
4 Hb_005278_020 0.074215458 - - PREDICTED: sorcin-like [Jatropha curcas]
5 Hb_017491_060 0.0785945351 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
6 Hb_006846_060 0.0788476783 - - inositol hexaphosphate kinase, putative [Ricinus communis]
7 Hb_000373_120 0.0816399309 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
8 Hb_015807_040 0.0822878473 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
9 Hb_006816_210 0.0836178821 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
10 Hb_003025_040 0.0840939665 - - PREDICTED: elongin-A [Jatropha curcas]
11 Hb_010042_010 0.0852720415 - - Urease accessory protein ureD, putative [Ricinus communis]
12 Hb_001016_030 0.0855157132 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
13 Hb_019762_020 0.0857690613 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
14 Hb_033153_060 0.0878368249 - - Transcription elongation factor, putative [Ricinus communis]
15 Hb_002918_290 0.0893005497 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
16 Hb_001461_010 0.0900439263 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
17 Hb_002110_200 0.0901389993 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_002016_120 0.0908068379 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
19 Hb_004127_020 0.0913186359 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
20 Hb_006541_010 0.0914277464 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_017413_010 Hb_017413_010 Hb_000789_230 Hb_000789_230 Hb_017413_010--Hb_000789_230 Hb_000331_450 Hb_000331_450 Hb_017413_010--Hb_000331_450 Hb_005278_020 Hb_005278_020 Hb_017413_010--Hb_005278_020 Hb_017491_060 Hb_017491_060 Hb_017413_010--Hb_017491_060 Hb_006846_060 Hb_006846_060 Hb_017413_010--Hb_006846_060 Hb_000373_120 Hb_000373_120 Hb_017413_010--Hb_000373_120 Hb_000016_080 Hb_000016_080 Hb_000789_230--Hb_000016_080 Hb_002110_200 Hb_002110_200 Hb_000789_230--Hb_002110_200 Hb_007065_010 Hb_007065_010 Hb_000789_230--Hb_007065_010 Hb_000254_050 Hb_000254_050 Hb_000789_230--Hb_000254_050 Hb_005463_140 Hb_005463_140 Hb_000789_230--Hb_005463_140 Hb_015807_040 Hb_015807_040 Hb_000331_450--Hb_015807_040 Hb_010042_010 Hb_010042_010 Hb_000331_450--Hb_010042_010 Hb_012053_070 Hb_012053_070 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010 Hb_026314_020 Hb_026314_020 Hb_005278_020--Hb_026314_020 Hb_012022_120 Hb_012022_120 Hb_005278_020--Hb_012022_120 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_001842_040 Hb_001842_040 Hb_005278_020--Hb_001842_040 Hb_004784_020 Hb_004784_020 Hb_005278_020--Hb_004784_020 Hb_143496_010 Hb_143496_010 Hb_017491_060--Hb_143496_010 Hb_006541_010 Hb_006541_010 Hb_017491_060--Hb_006541_010 Hb_017491_060--Hb_007065_010 Hb_001616_040 Hb_001616_040 Hb_017491_060--Hb_001616_040 Hb_004157_030 Hb_004157_030 Hb_017491_060--Hb_004157_030 Hb_012799_160 Hb_012799_160 Hb_006846_060--Hb_012799_160 Hb_001584_190 Hb_001584_190 Hb_006846_060--Hb_001584_190 Hb_003964_100 Hb_003964_100 Hb_006846_060--Hb_003964_100 Hb_006816_210 Hb_006816_210 Hb_006846_060--Hb_006816_210 Hb_000270_370 Hb_000270_370 Hb_006846_060--Hb_000270_370 Hb_001421_060 Hb_001421_060 Hb_000373_120--Hb_001421_060 Hb_000373_120--Hb_000270_370 Hb_000479_090 Hb_000479_090 Hb_000373_120--Hb_000479_090 Hb_000059_370 Hb_000059_370 Hb_000373_120--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000373_120--Hb_010068_020 Hb_004375_100 Hb_004375_100 Hb_000373_120--Hb_004375_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.310725 0.139984 0.226143 0.584852 0.446588 0.450389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.877993 1.06264 0.597327 0.329045 0.387895

CAGE analysis