Hb_017415_010

Information

Type -
Description -
Location Contig17415: 2245-7182
Sequence    

Annotation

kegg
ID cic:CICLE_v10033628mg
description hypothetical protein
nr
ID XP_006436321.1
description hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID V4TII4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033628mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017415_010 0.0 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
2 Hb_180367_010 0.0899099322 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
3 Hb_002149_030 0.103592065 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
4 Hb_003157_020 0.1100776058 - - PREDICTED: uncharacterized protein LOC104809111 [Tarenaya hassleriana]
5 Hb_164415_010 0.1203409888 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003567_020 0.1218722254 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000248_040 0.1557206088 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
8 Hb_003739_040 0.1569120381 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
9 Hb_171685_080 0.1639731141 - - unknown [Allium cepa]
10 Hb_004987_050 0.168055797 - - -
11 Hb_005054_140 0.1721711194 - - PREDICTED: laccase-4-like [Jatropha curcas]
12 Hb_000329_460 0.176344576 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
13 Hb_018283_010 0.1771085038 - - hypothetical protein VITISV_023498 [Vitis vinifera]
14 Hb_080126_010 0.1800497201 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
15 Hb_127361_010 0.1801683643 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_055002_010 0.1821072176 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
17 Hb_000002_470 0.1833595606 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
18 Hb_000003_630 0.1833595606 - - ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_000004_050 0.1833595606 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
20 Hb_000007_350 0.1833595606 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_017415_010 Hb_017415_010 Hb_180367_010 Hb_180367_010 Hb_017415_010--Hb_180367_010 Hb_002149_030 Hb_002149_030 Hb_017415_010--Hb_002149_030 Hb_003157_020 Hb_003157_020 Hb_017415_010--Hb_003157_020 Hb_164415_010 Hb_164415_010 Hb_017415_010--Hb_164415_010 Hb_003567_020 Hb_003567_020 Hb_017415_010--Hb_003567_020 Hb_000248_040 Hb_000248_040 Hb_017415_010--Hb_000248_040 Hb_180367_010--Hb_003567_020 Hb_003739_040 Hb_003739_040 Hb_180367_010--Hb_003739_040 Hb_180367_010--Hb_003157_020 Hb_180367_010--Hb_002149_030 Hb_180367_010--Hb_164415_010 Hb_002149_030--Hb_000248_040 Hb_000329_460 Hb_000329_460 Hb_002149_030--Hb_000329_460 Hb_003797_030 Hb_003797_030 Hb_002149_030--Hb_003797_030 Hb_025662_020 Hb_025662_020 Hb_002149_030--Hb_025662_020 Hb_000646_030 Hb_000646_030 Hb_002149_030--Hb_000646_030 Hb_171685_080 Hb_171685_080 Hb_003157_020--Hb_171685_080 Hb_010053_050 Hb_010053_050 Hb_003157_020--Hb_010053_050 Hb_003157_020--Hb_164415_010 Hb_010053_060 Hb_010053_060 Hb_003157_020--Hb_010053_060 Hb_000284_050 Hb_000284_050 Hb_003157_020--Hb_000284_050 Hb_164415_010--Hb_171685_080 Hb_006040_010 Hb_006040_010 Hb_164415_010--Hb_006040_010 Hb_004987_050 Hb_004987_050 Hb_164415_010--Hb_004987_050 Hb_005054_140 Hb_005054_140 Hb_164415_010--Hb_005054_140 Hb_003567_020--Hb_003739_040 Hb_121041_010 Hb_121041_010 Hb_003567_020--Hb_121041_010 Hb_003567_020--Hb_002149_030 Hb_158203_010 Hb_158203_010 Hb_003567_020--Hb_158203_010 Hb_000248_040--Hb_000329_460 Hb_000248_040--Hb_003797_030 Hb_000248_040--Hb_025662_020 Hb_000248_040--Hb_000646_030 Hb_005379_010 Hb_005379_010 Hb_000248_040--Hb_005379_010 Hb_074822_010 Hb_074822_010 Hb_000248_040--Hb_074822_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0606274 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0116521 1.02896

CAGE analysis