Hb_017417_010

Information

Type -
Description -
Location Contig17417: 185-3764
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017417_010 0.0 - - -
2 Hb_000668_010 0.1606158635 - - PREDICTED: probable beta-D-xylosidase 7 [Jatropha curcas]
3 Hb_000922_150 0.1668453059 - - -
4 Hb_004048_140 0.1758483476 - - -
5 Hb_000183_070 0.1915074629 - - -
6 Hb_019936_010 0.1929559384 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
7 Hb_005714_040 0.1955451682 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000188_190 0.1955917171 - - -
9 Hb_001811_040 0.2007509446 - - -
10 Hb_007017_060 0.203422298 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
11 Hb_003788_040 0.2039902912 - - -
12 Hb_005015_010 0.2045435667 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
13 Hb_009801_010 0.2045534605 - - ATPase inhibitor, putative [Ricinus communis]
14 Hb_000258_130 0.2049966478 - - -
15 Hb_033080_010 0.2080651079 - - -
16 Hb_010368_070 0.2084573711 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001198_090 0.209328039 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
18 Hb_080083_010 0.2111978601 - - -
19 Hb_008453_020 0.2123062985 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
20 Hb_017438_020 0.2135433692 - - -

Gene co-expression network

sample Hb_017417_010 Hb_017417_010 Hb_000668_010 Hb_000668_010 Hb_017417_010--Hb_000668_010 Hb_000922_150 Hb_000922_150 Hb_017417_010--Hb_000922_150 Hb_004048_140 Hb_004048_140 Hb_017417_010--Hb_004048_140 Hb_000183_070 Hb_000183_070 Hb_017417_010--Hb_000183_070 Hb_019936_010 Hb_019936_010 Hb_017417_010--Hb_019936_010 Hb_005714_040 Hb_005714_040 Hb_017417_010--Hb_005714_040 Hb_000668_010--Hb_019936_010 Hb_000188_190 Hb_000188_190 Hb_000668_010--Hb_000188_190 Hb_003788_040 Hb_003788_040 Hb_000668_010--Hb_003788_040 Hb_000544_040 Hb_000544_040 Hb_000668_010--Hb_000544_040 Hb_004032_460 Hb_004032_460 Hb_000668_010--Hb_004032_460 Hb_017438_020 Hb_017438_020 Hb_000922_150--Hb_017438_020 Hb_000258_130 Hb_000258_130 Hb_000922_150--Hb_000258_130 Hb_000300_380 Hb_000300_380 Hb_000922_150--Hb_000300_380 Hb_004374_050 Hb_004374_050 Hb_000922_150--Hb_004374_050 Hb_000922_150--Hb_000183_070 Hb_005015_010 Hb_005015_010 Hb_000922_150--Hb_005015_010 Hb_007017_060 Hb_007017_060 Hb_004048_140--Hb_007017_060 Hb_009801_010 Hb_009801_010 Hb_004048_140--Hb_009801_010 Hb_001473_190 Hb_001473_190 Hb_004048_140--Hb_001473_190 Hb_004324_020 Hb_004324_020 Hb_004048_140--Hb_004324_020 Hb_107847_010 Hb_107847_010 Hb_004048_140--Hb_107847_010 Hb_000183_070--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140 Hb_011616_030 Hb_011616_030 Hb_019936_010--Hb_011616_030 Hb_032264_130 Hb_032264_130 Hb_019936_010--Hb_032264_130 Hb_000525_040 Hb_000525_040 Hb_019936_010--Hb_000525_040 Hb_010368_070 Hb_010368_070 Hb_019936_010--Hb_010368_070 Hb_001454_390 Hb_001454_390 Hb_019936_010--Hb_001454_390 Hb_005714_040--Hb_005389_140 Hb_005714_040--Hb_005015_010 Hb_000590_090 Hb_000590_090 Hb_005714_040--Hb_000590_090 Hb_005714_040--Hb_006452_190 Hb_005714_040--Hb_000188_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66233 0.218012 0.0965967 0.0883673 2.24581 0.488926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.48102 0.982968 0.13287 0.03095 0.294158

CAGE analysis