Hb_017417_030

Information

Type transcription factor
Description TF Family: bZIP
Location Contig17417: 15209-15778
Sequence    

Annotation

kegg
ID rcu:RCOM_0366100
description Ocs element-binding factor, putative
nr
ID XP_002533570.1
description Ocs element-binding factor, putative [Ricinus communis]
swissprot
ID Q9FMC2
description Basic leucine zipper 43 OS=Arabidopsis thaliana GN=BZIP43 PE=1 SV=1
trembl
ID B9T5Q1
description Ocs element-binding factor, putative OS=Ricinus communis GN=RCOM_0366100 PE=4 SV=1
Gene Ontology
ID GO:0003700
description basic leucine zipper 43-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16609: 16086-16488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017417_030 0.0 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
2 Hb_135811_060 0.0992359496 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
3 Hb_002219_090 0.0996540296 - - protein kinase atmrk1, putative [Ricinus communis]
4 Hb_001073_060 0.1189530429 - - phosphate transporter 1 [Hevea brasiliensis]
5 Hb_001009_110 0.1237718507 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
6 Hb_149056_010 0.1259011705 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
7 Hb_002248_090 0.1350892653 - - metallothionein 3-like protein [Hevea brasiliensis]
8 Hb_000856_240 0.1355554707 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_000844_010 0.138689462 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
10 Hb_000333_130 0.1423250833 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_000345_190 0.142830864 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
12 Hb_000676_030 0.1501880969 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
13 Hb_000940_020 0.1503383121 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
14 Hb_000579_220 0.1519587348 - - transcription factor, putative [Ricinus communis]
15 Hb_046117_050 0.1524615502 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
16 Hb_011791_010 0.1551733224 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
17 Hb_001879_050 0.1557635285 - - Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_000172_010 0.1587917361 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
19 Hb_106969_010 0.1610099491 - - Cytochrome P450 76C4 [Glycine soja]
20 Hb_000521_210 0.1612346764 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_017417_030 Hb_017417_030 Hb_135811_060 Hb_135811_060 Hb_017417_030--Hb_135811_060 Hb_002219_090 Hb_002219_090 Hb_017417_030--Hb_002219_090 Hb_001073_060 Hb_001073_060 Hb_017417_030--Hb_001073_060 Hb_001009_110 Hb_001009_110 Hb_017417_030--Hb_001009_110 Hb_149056_010 Hb_149056_010 Hb_017417_030--Hb_149056_010 Hb_002248_090 Hb_002248_090 Hb_017417_030--Hb_002248_090 Hb_000856_240 Hb_000856_240 Hb_135811_060--Hb_000856_240 Hb_000703_320 Hb_000703_320 Hb_135811_060--Hb_000703_320 Hb_000045_180 Hb_000045_180 Hb_135811_060--Hb_000045_180 Hb_135811_060--Hb_149056_010 Hb_005081_080 Hb_005081_080 Hb_135811_060--Hb_005081_080 Hb_002219_090--Hb_149056_010 Hb_002219_090--Hb_001073_060 Hb_011791_010 Hb_011791_010 Hb_002219_090--Hb_011791_010 Hb_000676_030 Hb_000676_030 Hb_002219_090--Hb_000676_030 Hb_002219_090--Hb_001009_110 Hb_001073_060--Hb_000856_240 Hb_001073_060--Hb_011791_010 Hb_001073_060--Hb_000676_030 Hb_000333_130 Hb_000333_130 Hb_001073_060--Hb_000333_130 Hb_001073_060--Hb_149056_010 Hb_001009_110--Hb_149056_010 Hb_011214_140 Hb_011214_140 Hb_001009_110--Hb_011214_140 Hb_001009_110--Hb_000333_130 Hb_118777_010 Hb_118777_010 Hb_001009_110--Hb_118777_010 Hb_009778_030 Hb_009778_030 Hb_001009_110--Hb_009778_030 Hb_149056_010--Hb_000856_240 Hb_000579_220 Hb_000579_220 Hb_149056_010--Hb_000579_220 Hb_149056_010--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_149056_010--Hb_000123_310 Hb_002239_030 Hb_002239_030 Hb_002248_090--Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_002248_090--Hb_000101_140 Hb_000521_210 Hb_000521_210 Hb_002248_090--Hb_000521_210 Hb_011928_030 Hb_011928_030 Hb_002248_090--Hb_011928_030 Hb_000431_030 Hb_000431_030 Hb_002248_090--Hb_000431_030 Hb_002248_090--Hb_001073_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166128 28.0147 0.855572 5.92769 0.267494 0.588344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109089 0 0 11.1452 1.15133

CAGE analysis