Hb_017434_050

Information

Type -
Description -
Location Contig17434: 36117-42559
Sequence    

Annotation

kegg
ID rcu:RCOM_0241780
description importin beta-3, putative
nr
ID XP_012086461.1
description PREDICTED: importin subunit beta-3-like [Jatropha curcas]
swissprot
ID O74476
description Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=3 SV=1
trembl
ID A0A067JPM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22554 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017434_050 0.0 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
2 Hb_001894_170 0.1242294076 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
3 Hb_006594_020 0.1282439869 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
4 Hb_000373_180 0.1428176835 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
5 Hb_000723_190 0.1606619443 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
6 Hb_004414_050 0.163933935 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_009314_010 0.1640604736 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_000264_020 0.1660521983 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
9 Hb_005614_050 0.1690525311 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
10 Hb_001159_080 0.1714884399 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
11 Hb_002756_020 0.1747335625 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
12 Hb_000562_040 0.1752143464 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
13 Hb_003642_050 0.1753068382 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
14 Hb_007429_030 0.1761638666 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
15 Hb_002182_090 0.1781843008 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
16 Hb_002759_240 0.1790313685 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
17 Hb_006816_450 0.1827698674 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001369_450 0.1841978645 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_000010_410 0.1862575886 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
20 Hb_168501_010 0.1894804362 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_017434_050 Hb_017434_050 Hb_001894_170 Hb_001894_170 Hb_017434_050--Hb_001894_170 Hb_006594_020 Hb_006594_020 Hb_017434_050--Hb_006594_020 Hb_000373_180 Hb_000373_180 Hb_017434_050--Hb_000373_180 Hb_000723_190 Hb_000723_190 Hb_017434_050--Hb_000723_190 Hb_004414_050 Hb_004414_050 Hb_017434_050--Hb_004414_050 Hb_009314_010 Hb_009314_010 Hb_017434_050--Hb_009314_010 Hb_002759_240 Hb_002759_240 Hb_001894_170--Hb_002759_240 Hb_000264_020 Hb_000264_020 Hb_001894_170--Hb_000264_020 Hb_001894_170--Hb_000723_190 Hb_001894_170--Hb_000373_180 Hb_001894_170--Hb_006594_020 Hb_005614_050 Hb_005614_050 Hb_006594_020--Hb_005614_050 Hb_007161_010 Hb_007161_010 Hb_006594_020--Hb_007161_010 Hb_001232_130 Hb_001232_130 Hb_006594_020--Hb_001232_130 Hb_000380_020 Hb_000380_020 Hb_006594_020--Hb_000380_020 Hb_019654_090 Hb_019654_090 Hb_006594_020--Hb_019654_090 Hb_000373_180--Hb_000264_020 Hb_002298_050 Hb_002298_050 Hb_000373_180--Hb_002298_050 Hb_146225_010 Hb_146225_010 Hb_000373_180--Hb_146225_010 Hb_012053_050 Hb_012053_050 Hb_000373_180--Hb_012053_050 Hb_003326_020 Hb_003326_020 Hb_000373_180--Hb_003326_020 Hb_000723_190--Hb_002759_240 Hb_002182_090 Hb_002182_090 Hb_000723_190--Hb_002182_090 Hb_005539_240 Hb_005539_240 Hb_000723_190--Hb_005539_240 Hb_000252_130 Hb_000252_130 Hb_000723_190--Hb_000252_130 Hb_000432_050 Hb_000432_050 Hb_000723_190--Hb_000432_050 Hb_007429_030 Hb_007429_030 Hb_004414_050--Hb_007429_030 Hb_000125_030 Hb_000125_030 Hb_004414_050--Hb_000125_030 Hb_004410_100 Hb_004410_100 Hb_004414_050--Hb_004410_100 Hb_000019_060 Hb_000019_060 Hb_004414_050--Hb_000019_060 Hb_004128_180 Hb_004128_180 Hb_004414_050--Hb_004128_180 Hb_001159_080 Hb_001159_080 Hb_004414_050--Hb_001159_080 Hb_000161_150 Hb_000161_150 Hb_009314_010--Hb_000161_150 Hb_009314_010--Hb_000432_050 Hb_006816_450 Hb_006816_450 Hb_009314_010--Hb_006816_450 Hb_002756_020 Hb_002756_020 Hb_009314_010--Hb_002756_020 Hb_005224_010 Hb_005224_010 Hb_009314_010--Hb_005224_010 Hb_000771_130 Hb_000771_130 Hb_009314_010--Hb_000771_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26171 0.703158 0.181218 1.48148 0.752414 0.754801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78676 6.74146 9.70428 2.02487 0.188705

CAGE analysis