Hb_017434_080

Information

Type -
Description -
Location Contig17434: 80278-81368
Sequence    

Annotation

kegg
ID rcu:RCOM_0111720
description hypothetical protein
nr
ID XP_002528499.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SR80
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0111720 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor kan1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16617: 71785-81770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017434_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004586_410 0.1808798362 - - ring finger protein, putative [Ricinus communis]
3 Hb_003536_090 0.1925251963 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_007311_050 0.2036785791 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000030_130 0.2106575995 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_005914_130 0.2129271716 - - -
7 Hb_008695_220 0.2202844045 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
8 Hb_006816_110 0.2218305522 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
9 Hb_000176_080 0.22228594 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
10 Hb_000455_070 0.2252881779 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
11 Hb_006916_070 0.2262042515 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
12 Hb_012395_250 0.2263231347 - - hypothetical protein RCOM_1217340 [Ricinus communis]
13 Hb_000580_210 0.2290044264 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
14 Hb_009486_030 0.2295448521 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Jatropha curcas]
15 Hb_001418_050 0.2304158147 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
16 Hb_000054_010 0.231483788 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_000069_560 0.2329999122 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
18 Hb_000413_080 0.2330171958 - - -
19 Hb_005183_130 0.2333803798 - - glycogenin, putative [Ricinus communis]
20 Hb_000307_060 0.2334127952 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_017434_080 Hb_017434_080 Hb_004586_410 Hb_004586_410 Hb_017434_080--Hb_004586_410 Hb_003536_090 Hb_003536_090 Hb_017434_080--Hb_003536_090 Hb_007311_050 Hb_007311_050 Hb_017434_080--Hb_007311_050 Hb_000030_130 Hb_000030_130 Hb_017434_080--Hb_000030_130 Hb_005914_130 Hb_005914_130 Hb_017434_080--Hb_005914_130 Hb_008695_220 Hb_008695_220 Hb_017434_080--Hb_008695_220 Hb_004657_070 Hb_004657_070 Hb_004586_410--Hb_004657_070 Hb_000428_040 Hb_000428_040 Hb_004586_410--Hb_000428_040 Hb_005183_130 Hb_005183_130 Hb_004586_410--Hb_005183_130 Hb_000236_230 Hb_000236_230 Hb_004586_410--Hb_000236_230 Hb_000482_080 Hb_000482_080 Hb_004586_410--Hb_000482_080 Hb_002164_010 Hb_002164_010 Hb_003536_090--Hb_002164_010 Hb_000236_210 Hb_000236_210 Hb_003536_090--Hb_000236_210 Hb_020831_060 Hb_020831_060 Hb_003536_090--Hb_020831_060 Hb_001269_100 Hb_001269_100 Hb_003536_090--Hb_001269_100 Hb_000302_100 Hb_000302_100 Hb_003536_090--Hb_000302_100 Hb_000622_190 Hb_000622_190 Hb_007311_050--Hb_000622_190 Hb_000054_010 Hb_000054_010 Hb_007311_050--Hb_000054_010 Hb_007311_050--Hb_000482_080 Hb_102772_010 Hb_102772_010 Hb_007311_050--Hb_102772_010 Hb_003020_200 Hb_003020_200 Hb_007311_050--Hb_003020_200 Hb_000637_100 Hb_000637_100 Hb_007311_050--Hb_000637_100 Hb_019516_060 Hb_019516_060 Hb_000030_130--Hb_019516_060 Hb_174541_030 Hb_174541_030 Hb_000030_130--Hb_174541_030 Hb_003086_030 Hb_003086_030 Hb_000030_130--Hb_003086_030 Hb_000246_130 Hb_000246_130 Hb_000030_130--Hb_000246_130 Hb_000928_200 Hb_000928_200 Hb_000030_130--Hb_000928_200 Hb_030565_100 Hb_030565_100 Hb_000030_130--Hb_030565_100 Hb_010457_040 Hb_010457_040 Hb_005914_130--Hb_010457_040 Hb_003411_120 Hb_003411_120 Hb_005914_130--Hb_003411_120 Hb_005914_130--Hb_000482_080 Hb_001758_090 Hb_001758_090 Hb_005914_130--Hb_001758_090 Hb_000291_240 Hb_000291_240 Hb_005914_130--Hb_000291_240 Hb_005914_130--Hb_007311_050 Hb_007574_040 Hb_007574_040 Hb_008695_220--Hb_007574_040 Hb_000950_030 Hb_000950_030 Hb_008695_220--Hb_000950_030 Hb_017002_010 Hb_017002_010 Hb_008695_220--Hb_017002_010 Hb_008695_220--Hb_000246_130 Hb_000455_070 Hb_000455_070 Hb_008695_220--Hb_000455_070 Hb_014720_100 Hb_014720_100 Hb_008695_220--Hb_014720_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07735 2.15472 0.895794 22.2671 0 0.53648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.560661 1.32226 0 0.889615 3.98898

CAGE analysis