Hb_017434_090

Information

Type -
Description -
Location Contig17434: 89188-91765
Sequence    

Annotation

kegg
ID rcu:RCOM_0111840
description hypothetical protein
nr
ID XP_002528501.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SR82
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0111840 PE=4 SV=1
Gene Ontology
ID GO:0005783
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16618: 89188-91630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017434_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000282_060 0.0870679585 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
3 Hb_002660_140 0.090117945 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
4 Hb_003428_110 0.0953049754 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
5 Hb_000732_260 0.0966551344 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
6 Hb_005754_020 0.0990202347 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
7 Hb_004032_440 0.0990466542 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
8 Hb_002249_140 0.0990936437 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
9 Hb_033491_010 0.0998107975 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
10 Hb_003050_040 0.1040305109 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
11 Hb_004813_010 0.1047818971 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_001493_100 0.1057933635 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
13 Hb_000771_140 0.1064124293 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
14 Hb_000771_110 0.1085008413 - - protein phosphatase 2C [Hevea brasiliensis]
15 Hb_000784_090 0.1088433454 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
16 Hb_002007_310 0.1092263046 - - cyclin family protein [Populus trichocarpa]
17 Hb_000272_100 0.1113689323 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
18 Hb_000359_170 0.1116366534 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
19 Hb_001269_150 0.1119219744 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
20 Hb_006824_020 0.1119678112 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_017434_090 Hb_017434_090 Hb_000282_060 Hb_000282_060 Hb_017434_090--Hb_000282_060 Hb_002660_140 Hb_002660_140 Hb_017434_090--Hb_002660_140 Hb_003428_110 Hb_003428_110 Hb_017434_090--Hb_003428_110 Hb_000732_260 Hb_000732_260 Hb_017434_090--Hb_000732_260 Hb_005754_020 Hb_005754_020 Hb_017434_090--Hb_005754_020 Hb_004032_440 Hb_004032_440 Hb_017434_090--Hb_004032_440 Hb_000282_060--Hb_000732_260 Hb_033491_010 Hb_033491_010 Hb_000282_060--Hb_033491_010 Hb_006569_020 Hb_006569_020 Hb_000282_060--Hb_006569_020 Hb_118977_020 Hb_118977_020 Hb_000282_060--Hb_118977_020 Hb_000784_090 Hb_000784_090 Hb_000282_060--Hb_000784_090 Hb_001493_100 Hb_001493_100 Hb_000282_060--Hb_001493_100 Hb_002660_140--Hb_001493_100 Hb_002660_140--Hb_005754_020 Hb_000714_020 Hb_000714_020 Hb_002660_140--Hb_000714_020 Hb_002660_140--Hb_000784_090 Hb_008725_250 Hb_008725_250 Hb_002660_140--Hb_008725_250 Hb_001141_080 Hb_001141_080 Hb_003428_110--Hb_001141_080 Hb_000567_200 Hb_000567_200 Hb_003428_110--Hb_000567_200 Hb_001518_020 Hb_001518_020 Hb_003428_110--Hb_001518_020 Hb_009382_020 Hb_009382_020 Hb_003428_110--Hb_009382_020 Hb_003747_240 Hb_003747_240 Hb_003428_110--Hb_003747_240 Hb_000732_260--Hb_033491_010 Hb_002249_140 Hb_002249_140 Hb_000732_260--Hb_002249_140 Hb_000272_100 Hb_000272_100 Hb_000732_260--Hb_000272_100 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150 Hb_002044_090 Hb_002044_090 Hb_005754_020--Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_005754_020--Hb_000062_230 Hb_002377_040 Hb_002377_040 Hb_005754_020--Hb_002377_040 Hb_000028_470 Hb_000028_470 Hb_005754_020--Hb_000028_470 Hb_003352_050 Hb_003352_050 Hb_005754_020--Hb_003352_050 Hb_000176_140 Hb_000176_140 Hb_005754_020--Hb_000176_140 Hb_023988_020 Hb_023988_020 Hb_004032_440--Hb_023988_020 Hb_000184_040 Hb_000184_040 Hb_004032_440--Hb_000184_040 Hb_000376_110 Hb_000376_110 Hb_004032_440--Hb_000376_110 Hb_000920_140 Hb_000920_140 Hb_004032_440--Hb_000920_140 Hb_000762_020 Hb_000762_020 Hb_004032_440--Hb_000762_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
755.45 144.914 36.2819 113.81 606.838 481.776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
752.79 288.901 420.819 102.615 31.8047

CAGE analysis