Hb_017438_020

Information

Type -
Description -
Location Contig17438: 9616-15642
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017438_020 0.0 - - -
2 Hb_000922_150 0.0943596082 - - -
3 Hb_000258_130 0.1202812611 - - -
4 Hb_000300_380 0.1331632518 - - -
5 Hb_002942_220 0.1404115976 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
6 Hb_004241_070 0.1460459025 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
7 Hb_017168_010 0.1515647442 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012132_030 0.1527686207 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
9 Hb_028900_010 0.1546831615 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
10 Hb_002026_110 0.1557744611 - - protein binding protein, putative [Ricinus communis]
11 Hb_005237_010 0.1559984529 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
12 Hb_000270_140 0.1562943829 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
13 Hb_000422_140 0.1579435086 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
14 Hb_000327_240 0.1589949748 - - PREDICTED: interaptin-like [Jatropha curcas]
15 Hb_144787_030 0.1603349691 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
16 Hb_006816_290 0.1619609783 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
17 Hb_000614_080 0.1626103605 - - -
18 Hb_000946_120 0.1630262845 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000659_030 0.1631810621 - - pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
20 Hb_000015_010 0.1642602551 - - -

Gene co-expression network

sample Hb_017438_020 Hb_017438_020 Hb_000922_150 Hb_000922_150 Hb_017438_020--Hb_000922_150 Hb_000258_130 Hb_000258_130 Hb_017438_020--Hb_000258_130 Hb_000300_380 Hb_000300_380 Hb_017438_020--Hb_000300_380 Hb_002942_220 Hb_002942_220 Hb_017438_020--Hb_002942_220 Hb_004241_070 Hb_004241_070 Hb_017438_020--Hb_004241_070 Hb_017168_010 Hb_017168_010 Hb_017438_020--Hb_017168_010 Hb_000922_150--Hb_000258_130 Hb_000922_150--Hb_000300_380 Hb_004374_050 Hb_004374_050 Hb_000922_150--Hb_004374_050 Hb_000183_070 Hb_000183_070 Hb_000922_150--Hb_000183_070 Hb_005015_010 Hb_005015_010 Hb_000922_150--Hb_005015_010 Hb_000940_040 Hb_000940_040 Hb_000258_130--Hb_000940_040 Hb_179511_010 Hb_179511_010 Hb_000258_130--Hb_179511_010 Hb_010068_030 Hb_010068_030 Hb_000258_130--Hb_010068_030 Hb_000422_140 Hb_000422_140 Hb_000258_130--Hb_000422_140 Hb_015456_020 Hb_015456_020 Hb_000300_380--Hb_015456_020 Hb_004204_190 Hb_004204_190 Hb_000300_380--Hb_004204_190 Hb_000958_010 Hb_000958_010 Hb_000300_380--Hb_000958_010 Hb_005333_040 Hb_005333_040 Hb_000300_380--Hb_005333_040 Hb_000139_250 Hb_000139_250 Hb_002942_220--Hb_000139_250 Hb_010222_080 Hb_010222_080 Hb_002942_220--Hb_010222_080 Hb_002400_180 Hb_002400_180 Hb_002942_220--Hb_002400_180 Hb_004678_020 Hb_004678_020 Hb_002942_220--Hb_004678_020 Hb_002942_220--Hb_017168_010 Hb_144787_030 Hb_144787_030 Hb_002942_220--Hb_144787_030 Hb_000236_280 Hb_000236_280 Hb_004241_070--Hb_000236_280 Hb_004241_070--Hb_002942_220 Hb_000923_040 Hb_000923_040 Hb_004241_070--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_004241_070--Hb_000104_080 Hb_002007_350 Hb_002007_350 Hb_004241_070--Hb_002007_350 Hb_012305_070 Hb_012305_070 Hb_004241_070--Hb_012305_070 Hb_000107_100 Hb_000107_100 Hb_017168_010--Hb_000107_100 Hb_017168_010--Hb_010222_080 Hb_000340_510 Hb_000340_510 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_012132_030 Hb_012132_030 Hb_017168_010--Hb_012132_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.27077 2.2754 0.462915 0.233542 7.76553 2.82963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86391 2.40903 1.70672 0.826418 1.99938

CAGE analysis