Hb_017469_020

Information

Type -
Description -
Location Contig17469: 36419-37656
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16627: 36473-37610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017469_020 0.0 - - -
2 Hb_000395_290 0.0802222304 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
3 Hb_000000_160 0.0960136033 - - PREDICTED: membrin-11 [Jatropha curcas]
4 Hb_002868_010 0.098926621 - - 60S ribosomal protein L30, putative [Ricinus communis]
5 Hb_000649_320 0.1003023626 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
6 Hb_002007_060 0.1021340174 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
7 Hb_001898_230 0.1045844665 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
8 Hb_135545_010 0.1081573396 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_000141_040 0.1083383819 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
10 Hb_000120_330 0.1104952303 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001288_080 0.1109824994 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
12 Hb_086639_070 0.1112619681 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
13 Hb_013405_060 0.1112992927 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
14 Hb_000139_350 0.1116685995 - - AtGCP3 interacting protein 1 [Theobroma cacao]
15 Hb_002234_140 0.1124935347 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
16 Hb_003939_080 0.1140868185 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000866_270 0.1146764009 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
18 Hb_023226_040 0.1163451329 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
19 Hb_001259_090 0.1164039701 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
20 Hb_001252_110 0.1180773423 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_017469_020 Hb_017469_020 Hb_000395_290 Hb_000395_290 Hb_017469_020--Hb_000395_290 Hb_000000_160 Hb_000000_160 Hb_017469_020--Hb_000000_160 Hb_002868_010 Hb_002868_010 Hb_017469_020--Hb_002868_010 Hb_000649_320 Hb_000649_320 Hb_017469_020--Hb_000649_320 Hb_002007_060 Hb_002007_060 Hb_017469_020--Hb_002007_060 Hb_001898_230 Hb_001898_230 Hb_017469_020--Hb_001898_230 Hb_000141_040 Hb_000141_040 Hb_000395_290--Hb_000141_040 Hb_000395_290--Hb_002868_010 Hb_004453_170 Hb_004453_170 Hb_000395_290--Hb_004453_170 Hb_000096_170 Hb_000096_170 Hb_000395_290--Hb_000096_170 Hb_002234_140 Hb_002234_140 Hb_000395_290--Hb_002234_140 Hb_000000_160--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000000_160--Hb_023226_040 Hb_000661_250 Hb_000661_250 Hb_000000_160--Hb_000661_250 Hb_011360_140 Hb_011360_140 Hb_000000_160--Hb_011360_140 Hb_000494_020 Hb_000494_020 Hb_000000_160--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000000_160--Hb_010407_040 Hb_003939_080 Hb_003939_080 Hb_002868_010--Hb_003939_080 Hb_001946_210 Hb_001946_210 Hb_002868_010--Hb_001946_210 Hb_002868_010--Hb_002007_060 Hb_002868_010--Hb_000000_160 Hb_002868_010--Hb_011360_140 Hb_001512_070 Hb_001512_070 Hb_002868_010--Hb_001512_070 Hb_000120_330 Hb_000120_330 Hb_000649_320--Hb_000120_330 Hb_000789_060 Hb_000789_060 Hb_000649_320--Hb_000789_060 Hb_006018_040 Hb_006018_040 Hb_000649_320--Hb_006018_040 Hb_004586_140 Hb_004586_140 Hb_000649_320--Hb_004586_140 Hb_052764_050 Hb_052764_050 Hb_000649_320--Hb_052764_050 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_019962_030 Hb_019962_030 Hb_001898_230--Hb_019962_030 Hb_007164_020 Hb_007164_020 Hb_001898_230--Hb_007164_020 Hb_001511_020 Hb_001511_020 Hb_001898_230--Hb_001511_020 Hb_000089_220 Hb_000089_220 Hb_001898_230--Hb_000089_220 Hb_000473_040 Hb_000473_040 Hb_001898_230--Hb_000473_040 Hb_007007_050 Hb_007007_050 Hb_001898_230--Hb_007007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.30706 4.19012 3.2556 2.09678 3.1423 5.12501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.769 8.42995 2.82558 1.25376 1.55924

CAGE analysis