Hb_017469_090

Information

Type -
Description -
Location Contig17469: 74202-77949
Sequence    

Annotation

kegg
ID tcc:TCM_013858
description Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative
nr
ID XP_007037251.1
description Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative [Theobroma cacao]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A061FY14
description Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative OS=Theobroma cacao GN=TCM_013858 PE=4 SV=1
Gene Ontology
ID GO:0005488
description catalytic zinc cchc- peptidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017469_090 0.0 - - Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative [Theobroma cacao]
2 Hb_001538_170 0.1677681736 - - -
3 Hb_001005_180 0.2362216749 - - hypothetical protein Csa_5G464830 [Cucumis sativus]
4 Hb_101376_010 0.2398910962 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001198_140 0.2464845904 - - -
6 Hb_000928_290 0.275032838 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
7 Hb_152868_010 0.3194236191 rubber biosynthesis Gene Name: REF5 small rubber particle protein [Hevea brasiliensis]
8 Hb_001862_020 0.3195678768 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
9 Hb_003407_020 0.3196399931 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_146361_020 0.3196722495 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
11 Hb_186115_010 0.3197184538 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_002903_030 0.3201985802 - - polyphenol oxidase [Cydonia oblonga]
13 Hb_176232_040 0.3203917134 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012355_010 0.3215514138 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
15 Hb_003938_220 0.3228056125 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
16 Hb_001522_050 0.3232469251 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
17 Hb_156683_010 0.3238388017 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
18 Hb_000028_540 0.3241466823 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
19 Hb_002231_140 0.324491866 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
20 Hb_005656_110 0.3249922655 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_017469_090 Hb_017469_090 Hb_001538_170 Hb_001538_170 Hb_017469_090--Hb_001538_170 Hb_001005_180 Hb_001005_180 Hb_017469_090--Hb_001005_180 Hb_101376_010 Hb_101376_010 Hb_017469_090--Hb_101376_010 Hb_001198_140 Hb_001198_140 Hb_017469_090--Hb_001198_140 Hb_000928_290 Hb_000928_290 Hb_017469_090--Hb_000928_290 Hb_152868_010 Hb_152868_010 Hb_017469_090--Hb_152868_010 Hb_001538_170--Hb_001198_140 Hb_001538_170--Hb_001005_180 Hb_001538_170--Hb_000928_290 Hb_000364_200 Hb_000364_200 Hb_001538_170--Hb_000364_200 Hb_147355_030 Hb_147355_030 Hb_001538_170--Hb_147355_030 Hb_001005_180--Hb_152868_010 Hb_001005_180--Hb_000364_200 Hb_001005_180--Hb_101376_010 Hb_000251_060 Hb_000251_060 Hb_001005_180--Hb_000251_060 Hb_001258_070 Hb_001258_070 Hb_101376_010--Hb_001258_070 Hb_101376_010--Hb_152868_010 Hb_036026_010 Hb_036026_010 Hb_101376_010--Hb_036026_010 Hb_001898_170 Hb_001898_170 Hb_101376_010--Hb_001898_170 Hb_001198_140--Hb_000928_290 Hb_001971_070 Hb_001971_070 Hb_001198_140--Hb_001971_070 Hb_010571_010 Hb_010571_010 Hb_001198_140--Hb_010571_010 Hb_027634_010 Hb_027634_010 Hb_001198_140--Hb_027634_010 Hb_164162_020 Hb_164162_020 Hb_001198_140--Hb_164162_020 Hb_001195_440 Hb_001195_440 Hb_001198_140--Hb_001195_440 Hb_000928_290--Hb_010571_010 Hb_000928_290--Hb_001971_070 Hb_001522_050 Hb_001522_050 Hb_000928_290--Hb_001522_050 Hb_000928_290--Hb_027634_010 Hb_006120_010 Hb_006120_010 Hb_000928_290--Hb_006120_010 Hb_007113_030 Hb_007113_030 Hb_152868_010--Hb_007113_030 Hb_000925_120 Hb_000925_120 Hb_152868_010--Hb_000925_120 Hb_055154_010 Hb_055154_010 Hb_152868_010--Hb_055154_010 Hb_116783_010 Hb_116783_010 Hb_152868_010--Hb_116783_010 Hb_001633_120 Hb_001633_120 Hb_152868_010--Hb_001633_120 Hb_090510_010 Hb_090510_010 Hb_152868_010--Hb_090510_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00974759 0 0 0.0138684 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0277315 0

CAGE analysis