Hb_017491_030

Information

Type -
Description -
Location Contig17491: 27091-31031
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06880g
description POPTRDRAFT_415156; hypothetical protein
nr
ID XP_012068822.1
description PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
swissprot
ID O80377
description 40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1
trembl
ID A0A067KWW8
description 40S ribosomal protein SA OS=Jatropha curcas GN=JCGZ_24651 PE=3 SV=1
Gene Ontology
ID GO:0005634
description 40s ribosomal protein sa-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16654: 27123-29872 , PASA_asmbl_16655: 18510-29829 , PASA_asmbl_16656: 30240-31463 , PASA_asmbl_16657: 31171-31401
cDNA
(Sanger)
(ID:Location)		 003_A16.ab1: 30298-31449 , 032_A19.ab1: 27921-29848 , 040_D13.ab1: 30301-31449 , 048_H08.ab1: 27881-29872

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017491_030 0.0 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
2 Hb_004970_090 0.0514255285 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
3 Hb_112798_020 0.0638633579 - - dnajc14 protein, putative [Ricinus communis]
4 Hb_002783_310 0.0754456506 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
5 Hb_005489_080 0.0765800205 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003952_070 0.0780054776 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_001486_340 0.0786620721 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
8 Hb_142439_010 0.0809500555 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
9 Hb_000256_190 0.0809990334 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
10 Hb_000521_260 0.0819398354 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
11 Hb_075481_030 0.0829373061 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
12 Hb_005276_210 0.0854399159 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
13 Hb_000853_350 0.086469191 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
14 Hb_008159_020 0.0869629889 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
15 Hb_063716_080 0.0871718467 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
16 Hb_004128_050 0.0879208019 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
17 Hb_154114_010 0.0883141756 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
18 Hb_000334_270 0.0886144853 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
19 Hb_001347_040 0.0901109025 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
20 Hb_003935_030 0.0904261792 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_017491_030 Hb_017491_030 Hb_004970_090 Hb_004970_090 Hb_017491_030--Hb_004970_090 Hb_112798_020 Hb_112798_020 Hb_017491_030--Hb_112798_020 Hb_002783_310 Hb_002783_310 Hb_017491_030--Hb_002783_310 Hb_005489_080 Hb_005489_080 Hb_017491_030--Hb_005489_080 Hb_003952_070 Hb_003952_070 Hb_017491_030--Hb_003952_070 Hb_001486_340 Hb_001486_340 Hb_017491_030--Hb_001486_340 Hb_004970_090--Hb_112798_020 Hb_004970_090--Hb_005489_080 Hb_000732_120 Hb_000732_120 Hb_004970_090--Hb_000732_120 Hb_011512_080 Hb_011512_080 Hb_004970_090--Hb_011512_080 Hb_001104_160 Hb_001104_160 Hb_004970_090--Hb_001104_160 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190 Hb_000771_180 Hb_000771_180 Hb_002783_310--Hb_000771_180 Hb_050847_020 Hb_050847_020 Hb_002783_310--Hb_050847_020 Hb_007520_030 Hb_007520_030 Hb_002783_310--Hb_007520_030 Hb_000334_270 Hb_000334_270 Hb_002783_310--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_002783_310--Hb_000664_070 Hb_000046_010 Hb_000046_010 Hb_002783_310--Hb_000046_010 Hb_031527_020 Hb_031527_020 Hb_005489_080--Hb_031527_020 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_003785_040 Hb_003785_040 Hb_005489_080--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_005489_080--Hb_111198_010 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_004881_020 Hb_004881_020 Hb_003952_070--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_003952_070--Hb_006252_040 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_000538_100 Hb_000538_100 Hb_003952_070--Hb_000538_100 Hb_005276_210 Hb_005276_210 Hb_003952_070--Hb_005276_210 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150 Hb_001486_340--Hb_000538_100 Hb_000179_030 Hb_000179_030 Hb_001486_340--Hb_000179_030 Hb_006355_010 Hb_006355_010 Hb_001486_340--Hb_006355_010 Hb_000308_030 Hb_000308_030 Hb_001486_340--Hb_000308_030 Hb_000174_110 Hb_000174_110 Hb_001486_340--Hb_000174_110 Hb_006620_020 Hb_006620_020 Hb_001486_340--Hb_006620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
127.725 165.617 73.0756 92.2495 193.496 173.853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.875 133.91 67.129 101.92 52.9995

CAGE analysis