Hb_017491_040

Information

Type -
Description -
Location Contig17491: 33724-34086
Sequence    

Annotation

kegg
ID rcu:RCOM_0683580
description hypothetical protein
nr
ID XP_012068824.1
description PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L984
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24653 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16658: 33711-33882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017491_040 0.0 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
2 Hb_004021_100 0.0956460461 - - -
3 Hb_002042_200 0.1063830123 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_008705_040 0.1185497876 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
5 Hb_001623_400 0.1244625443 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004452_080 0.1315807951 - - ring finger protein, putative [Ricinus communis]
7 Hb_166813_010 0.1450409382 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
8 Hb_007432_050 0.1469057247 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
9 Hb_000175_480 0.1496808127 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
10 Hb_001959_030 0.1521880269 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000238_060 0.1533387094 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
12 Hb_003734_120 0.1546770914 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
13 Hb_004122_030 0.1574357354 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
14 Hb_027634_010 0.1579464336 - - protein binding protein, putative [Ricinus communis]
15 Hb_001405_100 0.1595167616 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
16 Hb_003064_010 0.1611131847 - - Senescence-related gene 1 [Theobroma cacao]
17 Hb_127743_030 0.1620423897 - - amino acid transporter, putative [Ricinus communis]
18 Hb_111147_010 0.1627733981 - - conserved hypothetical protein [Ricinus communis]
19 Hb_058526_010 0.1687056553 - - -
20 Hb_003166_040 0.1705422249 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_017491_040 Hb_017491_040 Hb_004021_100 Hb_004021_100 Hb_017491_040--Hb_004021_100 Hb_002042_200 Hb_002042_200 Hb_017491_040--Hb_002042_200 Hb_008705_040 Hb_008705_040 Hb_017491_040--Hb_008705_040 Hb_001623_400 Hb_001623_400 Hb_017491_040--Hb_001623_400 Hb_004452_080 Hb_004452_080 Hb_017491_040--Hb_004452_080 Hb_166813_010 Hb_166813_010 Hb_017491_040--Hb_166813_010 Hb_058526_010 Hb_058526_010 Hb_004021_100--Hb_058526_010 Hb_003064_010 Hb_003064_010 Hb_004021_100--Hb_003064_010 Hb_127743_030 Hb_127743_030 Hb_004021_100--Hb_127743_030 Hb_007432_050 Hb_007432_050 Hb_004021_100--Hb_007432_050 Hb_003166_040 Hb_003166_040 Hb_004021_100--Hb_003166_040 Hb_002042_200--Hb_001623_400 Hb_018133_110 Hb_018133_110 Hb_002042_200--Hb_018133_110 Hb_000175_480 Hb_000175_480 Hb_002042_200--Hb_000175_480 Hb_027634_010 Hb_027634_010 Hb_002042_200--Hb_027634_010 Hb_001959_030 Hb_001959_030 Hb_002042_200--Hb_001959_030 Hb_039496_010 Hb_039496_010 Hb_008705_040--Hb_039496_010 Hb_008705_040--Hb_004452_080 Hb_028008_030 Hb_028008_030 Hb_008705_040--Hb_028008_030 Hb_003805_080 Hb_003805_080 Hb_008705_040--Hb_003805_080 Hb_111147_010 Hb_111147_010 Hb_008705_040--Hb_111147_010 Hb_001623_400--Hb_003064_010 Hb_000347_230 Hb_000347_230 Hb_001623_400--Hb_000347_230 Hb_001623_400--Hb_004021_100 Hb_003734_120 Hb_003734_120 Hb_001623_400--Hb_003734_120 Hb_022998_010 Hb_022998_010 Hb_004452_080--Hb_022998_010 Hb_004452_080--Hb_004021_100 Hb_004452_080--Hb_007432_050 Hb_002236_070 Hb_002236_070 Hb_004452_080--Hb_002236_070 Hb_002475_020 Hb_002475_020 Hb_166813_010--Hb_002475_020 Hb_000948_070 Hb_000948_070 Hb_166813_010--Hb_000948_070 Hb_000608_080 Hb_000608_080 Hb_166813_010--Hb_000608_080 Hb_000141_230 Hb_000141_230 Hb_166813_010--Hb_000141_230 Hb_004544_080 Hb_004544_080 Hb_166813_010--Hb_004544_080 Hb_000238_060 Hb_000238_060 Hb_166813_010--Hb_000238_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.33238 0.600403 1.73063 0.103143 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.83478 0

CAGE analysis