Hb_017491_060

Information

Type -
Description -
Location Contig17491: 39505-45013
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08710g
description POPTRDRAFT_726410; chaperone-related family protein
nr
ID XP_012068828.1
description PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
swissprot
ID Q9LQI7
description Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2
trembl
ID A0A067KWS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24655 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16660: 37950-43595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017491_060 0.0 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
2 Hb_143496_010 0.0699678663 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
3 Hb_006541_010 0.0744496608 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
4 Hb_007065_010 0.0764081182 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
5 Hb_017413_010 0.0785945351 - - -
6 Hb_001616_040 0.078933706 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
7 Hb_004157_030 0.0862911645 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
8 Hb_033153_060 0.0867328543 - - Transcription elongation factor, putative [Ricinus communis]
9 Hb_000789_230 0.0881322914 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
10 Hb_007441_300 0.0886340817 - - ATP binding protein, putative [Ricinus communis]
11 Hb_002631_020 0.0888598096 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
12 Hb_007012_060 0.0895243147 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
13 Hb_006915_040 0.0898063736 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
14 Hb_003018_020 0.0909552108 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
15 Hb_003226_100 0.0920495118 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
16 Hb_143766_010 0.0920949959 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
17 Hb_001016_030 0.0928666299 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
18 Hb_005463_140 0.0940817029 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
19 Hb_002000_140 0.094340471 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
20 Hb_012022_120 0.0951787752 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_017491_060 Hb_017491_060 Hb_143496_010 Hb_143496_010 Hb_017491_060--Hb_143496_010 Hb_006541_010 Hb_006541_010 Hb_017491_060--Hb_006541_010 Hb_007065_010 Hb_007065_010 Hb_017491_060--Hb_007065_010 Hb_017413_010 Hb_017413_010 Hb_017491_060--Hb_017413_010 Hb_001616_040 Hb_001616_040 Hb_017491_060--Hb_001616_040 Hb_004157_030 Hb_004157_030 Hb_017491_060--Hb_004157_030 Hb_010175_040 Hb_010175_040 Hb_143496_010--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_143496_010--Hb_003226_100 Hb_001141_140 Hb_001141_140 Hb_143496_010--Hb_001141_140 Hb_003018_020 Hb_003018_020 Hb_143496_010--Hb_003018_020 Hb_000699_160 Hb_000699_160 Hb_143496_010--Hb_000699_160 Hb_033153_060 Hb_033153_060 Hb_006541_010--Hb_033153_060 Hb_006541_010--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_006541_010--Hb_004459_040 Hb_007576_170 Hb_007576_170 Hb_006541_010--Hb_007576_170 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_002798_020 Hb_002798_020 Hb_007065_010--Hb_002798_020 Hb_000789_230 Hb_000789_230 Hb_007065_010--Hb_000789_230 Hb_000735_090 Hb_000735_090 Hb_007065_010--Hb_000735_090 Hb_000016_080 Hb_000016_080 Hb_007065_010--Hb_000016_080 Hb_002613_020 Hb_002613_020 Hb_007065_010--Hb_002613_020 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_017413_010--Hb_000789_230 Hb_000331_450 Hb_000331_450 Hb_017413_010--Hb_000331_450 Hb_005278_020 Hb_005278_020 Hb_017413_010--Hb_005278_020 Hb_006846_060 Hb_006846_060 Hb_017413_010--Hb_006846_060 Hb_000373_120 Hb_000373_120 Hb_017413_010--Hb_000373_120 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_001616_040--Hb_010175_040 Hb_001616_040--Hb_003226_100 Hb_004157_030--Hb_003226_100 Hb_004157_030--Hb_003018_020 Hb_001814_050 Hb_001814_050 Hb_004157_030--Hb_001814_050 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09404 1.24641 2.82752 4.92984 3.40303 4.06671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.86782 11.2937 4.58892 3.76514 2.41701

CAGE analysis