Hb_017524_020

Information

Type -
Description -
Location Contig17524: 17466-19932
Sequence    

Annotation

kegg
ID rcu:RCOM_1305460
description Rho GDP-dissociation inhibitor, putative
nr
ID XP_002518613.1
description Rho GDP-dissociation inhibitor, putative [Ricinus communis]
swissprot
ID Q9SFC6
description Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1
trembl
ID B9RXZ4
description Rho GDP-dissociation inhibitor, putative OS=Ricinus communis GN=RCOM_1305460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017524_020 0.0 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
2 Hb_000628_080 0.0740628552 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
3 Hb_001277_390 0.0939470982 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
4 Hb_000905_130 0.0946484817 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
5 Hb_103942_020 0.0978912319 - - unknown [Zea mays]
6 Hb_001454_030 0.0989599595 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
7 Hb_000224_070 0.1001311988 - - -
8 Hb_118941_010 0.1009991734 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
9 Hb_006846_050 0.1011790562 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_000431_040 0.1014586039 - - PREDICTED: uncharacterized protein LOC105635551 [Jatropha curcas]
11 Hb_006618_060 0.1047553262 - - PREDICTED: 21 kDa protein [Jatropha curcas]
12 Hb_002701_200 0.1061857742 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
13 Hb_000270_590 0.107316212 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
14 Hb_120496_010 0.1079922501 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
15 Hb_002601_030 0.1119331156 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
16 Hb_085158_010 0.1119681412 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
17 Hb_005539_330 0.1123630763 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
18 Hb_000389_120 0.1133572833 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
19 Hb_069237_010 0.1137789995 - - -
20 Hb_000258_010 0.1138958898 - - lipid transfer precursor protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_017524_020 Hb_017524_020 Hb_000628_080 Hb_000628_080 Hb_017524_020--Hb_000628_080 Hb_001277_390 Hb_001277_390 Hb_017524_020--Hb_001277_390 Hb_000905_130 Hb_000905_130 Hb_017524_020--Hb_000905_130 Hb_103942_020 Hb_103942_020 Hb_017524_020--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_017524_020--Hb_001454_030 Hb_000224_070 Hb_000224_070 Hb_017524_020--Hb_000224_070 Hb_000628_080--Hb_103942_020 Hb_000628_080--Hb_001454_030 Hb_000628_080--Hb_001277_390 Hb_000628_080--Hb_000905_130 Hb_006618_060 Hb_006618_060 Hb_000628_080--Hb_006618_060 Hb_118941_010 Hb_118941_010 Hb_001277_390--Hb_118941_010 Hb_001277_390--Hb_000224_070 Hb_120496_010 Hb_120496_010 Hb_001277_390--Hb_120496_010 Hb_001591_020 Hb_001591_020 Hb_001277_390--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_001277_390--Hb_000733_170 Hb_001892_040 Hb_001892_040 Hb_001277_390--Hb_001892_040 Hb_000270_590 Hb_000270_590 Hb_000905_130--Hb_000270_590 Hb_000375_210 Hb_000375_210 Hb_000905_130--Hb_000375_210 Hb_003050_210 Hb_003050_210 Hb_000905_130--Hb_003050_210 Hb_000296_030 Hb_000296_030 Hb_000905_130--Hb_000296_030 Hb_006846_050 Hb_006846_050 Hb_000905_130--Hb_006846_050 Hb_103942_020--Hb_001454_030 Hb_007441_320 Hb_007441_320 Hb_103942_020--Hb_007441_320 Hb_003607_040 Hb_003607_040 Hb_103942_020--Hb_003607_040 Hb_000012_340 Hb_000012_340 Hb_103942_020--Hb_000012_340 Hb_002186_190 Hb_002186_190 Hb_103942_020--Hb_002186_190 Hb_001454_030--Hb_007441_320 Hb_001634_070 Hb_001634_070 Hb_001454_030--Hb_001634_070 Hb_001454_030--Hb_002186_190 Hb_001454_030--Hb_003607_040 Hb_000224_070--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_000224_070--Hb_120496_010 Hb_000224_070--Hb_001892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106553 0.191853 0.688318 18.056 0.0666726 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.127405

CAGE analysis