Hb_017549_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig17549: 37-5293
Sequence    

Annotation

kegg
ID cit:102624582
description TMV resistance protein N-like
nr
ID KDP42425.1
description hypothetical protein JCGZ_00222 [Jatropha curcas]
swissprot
ID P0CB16
description Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2
trembl
ID A0A067LD49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00222 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16814: 51-263 , PASA_asmbl_16815: 871-1213 , PASA_asmbl_16816: 3964-4921 , PASA_asmbl_16817: 4922-5118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017549_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
2 Hb_001115_100 0.0890624611 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
3 Hb_000120_600 0.095386611 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
4 Hb_002597_030 0.1024463437 - - -
5 Hb_004374_170 0.1051848208 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
6 Hb_002804_070 0.1146165124 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
7 Hb_029576_070 0.1161389302 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
8 Hb_003529_010 0.1202150031 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
9 Hb_001675_350 0.1233481907 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
10 Hb_002783_210 0.1281052423 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
11 Hb_008352_020 0.1281561952 - - hypothetical protein [Cecembia lonarensis]
12 Hb_001856_130 0.1300026918 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
13 Hb_001221_050 0.1373940132 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
14 Hb_001953_010 0.1390420509 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
15 Hb_002303_050 0.1391470406 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
16 Hb_000504_100 0.1402644876 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001675_260 0.1407138492 - - nitrate transporter, putative [Ricinus communis]
18 Hb_002186_030 0.1414556416 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
19 Hb_005946_200 0.1434726054 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
20 Hb_000139_050 0.143741839 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]

Gene co-expression network

sample Hb_017549_010 Hb_017549_010 Hb_001115_100 Hb_001115_100 Hb_017549_010--Hb_001115_100 Hb_000120_600 Hb_000120_600 Hb_017549_010--Hb_000120_600 Hb_002597_030 Hb_002597_030 Hb_017549_010--Hb_002597_030 Hb_004374_170 Hb_004374_170 Hb_017549_010--Hb_004374_170 Hb_002804_070 Hb_002804_070 Hb_017549_010--Hb_002804_070 Hb_029576_070 Hb_029576_070 Hb_017549_010--Hb_029576_070 Hb_002186_030 Hb_002186_030 Hb_001115_100--Hb_002186_030 Hb_003209_120 Hb_003209_120 Hb_001115_100--Hb_003209_120 Hb_001115_100--Hb_004374_170 Hb_001221_050 Hb_001221_050 Hb_001115_100--Hb_001221_050 Hb_001675_350 Hb_001675_350 Hb_001115_100--Hb_001675_350 Hb_001856_130 Hb_001856_130 Hb_000120_600--Hb_001856_130 Hb_000120_600--Hb_002804_070 Hb_001953_010 Hb_001953_010 Hb_000120_600--Hb_001953_010 Hb_000120_600--Hb_004374_170 Hb_004474_070 Hb_004474_070 Hb_000120_600--Hb_004474_070 Hb_002597_030--Hb_029576_070 Hb_001677_190 Hb_001677_190 Hb_002597_030--Hb_001677_190 Hb_002597_030--Hb_000120_600 Hb_002597_030--Hb_001856_130 Hb_036029_020 Hb_036029_020 Hb_002597_030--Hb_036029_020 Hb_004374_170--Hb_002804_070 Hb_006951_010 Hb_006951_010 Hb_004374_170--Hb_006951_010 Hb_004374_170--Hb_001953_010 Hb_005946_200 Hb_005946_200 Hb_004374_170--Hb_005946_200 Hb_002804_070--Hb_001953_010 Hb_002804_070--Hb_005946_200 Hb_002303_050 Hb_002303_050 Hb_002804_070--Hb_002303_050 Hb_002804_070--Hb_004474_070 Hb_029576_070--Hb_000120_600 Hb_029576_070--Hb_001856_130 Hb_029576_070--Hb_001677_190 Hb_011355_020 Hb_011355_020 Hb_029576_070--Hb_011355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0513508 3.15078 1.93403 6.18431 0.0695935 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0275498 0 0 0.155517 0.318788

CAGE analysis