Hb_017559_010

Information

Type -
Description -
Location Contig17559: 3276-3818
Sequence    

Annotation

kegg
ID vvi:100248127
description probable disease resistance protein At1g12280
nr
ID KDP37037.1
description hypothetical protein JCGZ_06093 [Jatropha curcas]
swissprot
ID O22727
description Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1
trembl
ID A0A067KLL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06093 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16826: 3044-3925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017559_010 0.0 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
2 Hb_002603_010 0.1255716319 - - unnamed protein product [Vitis vinifera]
3 Hb_000574_370 0.1494028578 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
4 Hb_009193_060 0.1623962741 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
5 Hb_001619_030 0.169342163 - - annexin, putative [Ricinus communis]
6 Hb_002093_050 0.1723532121 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
7 Hb_000473_030 0.1766254247 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
8 Hb_002527_060 0.1783135284 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
9 Hb_000442_130 0.1784723028 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001488_280 0.1842830845 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
11 Hb_005485_070 0.1853692481 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
12 Hb_001951_070 0.1856939973 - - putative protein [Arabidopsis thaliana]
13 Hb_000085_380 0.1870862794 - - conserved hypothetical protein [Ricinus communis]
14 Hb_153257_010 0.1892512023 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
15 Hb_003106_110 0.1893912225 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
16 Hb_002640_040 0.1945877456 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000220_080 0.1977852729 - - kinase, putative [Ricinus communis]
18 Hb_001221_390 0.1979514887 - - Phospholipase C 4 precursor, putative [Ricinus communis]
19 Hb_000590_070 0.1988459907 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
20 Hb_001277_400 0.2008588766 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_017559_010 Hb_017559_010 Hb_002603_010 Hb_002603_010 Hb_017559_010--Hb_002603_010 Hb_000574_370 Hb_000574_370 Hb_017559_010--Hb_000574_370 Hb_009193_060 Hb_009193_060 Hb_017559_010--Hb_009193_060 Hb_001619_030 Hb_001619_030 Hb_017559_010--Hb_001619_030 Hb_002093_050 Hb_002093_050 Hb_017559_010--Hb_002093_050 Hb_000473_030 Hb_000473_030 Hb_017559_010--Hb_000473_030 Hb_002603_010--Hb_000574_370 Hb_000254_010 Hb_000254_010 Hb_002603_010--Hb_000254_010 Hb_002943_010 Hb_002943_010 Hb_002603_010--Hb_002943_010 Hb_002603_010--Hb_000473_030 Hb_033234_010 Hb_033234_010 Hb_002603_010--Hb_033234_010 Hb_000139_510 Hb_000139_510 Hb_000574_370--Hb_000139_510 Hb_001268_300 Hb_001268_300 Hb_000574_370--Hb_001268_300 Hb_001488_280 Hb_001488_280 Hb_000574_370--Hb_001488_280 Hb_000574_370--Hb_009193_060 Hb_002833_020 Hb_002833_020 Hb_000574_370--Hb_002833_020 Hb_000417_280 Hb_000417_280 Hb_009193_060--Hb_000417_280 Hb_009193_060--Hb_001268_300 Hb_003106_110 Hb_003106_110 Hb_009193_060--Hb_003106_110 Hb_001008_110 Hb_001008_110 Hb_009193_060--Hb_001008_110 Hb_011537_020 Hb_011537_020 Hb_009193_060--Hb_011537_020 Hb_004096_220 Hb_004096_220 Hb_009193_060--Hb_004096_220 Hb_002527_060 Hb_002527_060 Hb_001619_030--Hb_002527_060 Hb_005181_060 Hb_005181_060 Hb_001619_030--Hb_005181_060 Hb_004330_080 Hb_004330_080 Hb_001619_030--Hb_004330_080 Hb_078081_010 Hb_078081_010 Hb_001619_030--Hb_078081_010 Hb_000590_070 Hb_000590_070 Hb_001619_030--Hb_000590_070 Hb_153257_010 Hb_153257_010 Hb_002093_050--Hb_153257_010 Hb_004746_010 Hb_004746_010 Hb_002093_050--Hb_004746_010 Hb_000406_090 Hb_000406_090 Hb_002093_050--Hb_000406_090 Hb_098315_090 Hb_098315_090 Hb_002093_050--Hb_098315_090 Hb_000823_010 Hb_000823_010 Hb_002093_050--Hb_000823_010 Hb_000803_120 Hb_000803_120 Hb_002093_050--Hb_000803_120 Hb_000019_170 Hb_000019_170 Hb_000473_030--Hb_000019_170 Hb_000473_030--Hb_000590_070 Hb_007317_020 Hb_007317_020 Hb_000473_030--Hb_007317_020 Hb_000365_200 Hb_000365_200 Hb_000473_030--Hb_000365_200 Hb_009535_030 Hb_009535_030 Hb_000473_030--Hb_009535_030 Hb_000473_030--Hb_005181_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05511 1.8918 2.13214 2.94365 0.592631 0.0837425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.31801 4.46288 2.28406

CAGE analysis