Hb_017604_020

Information

Type -
Description -
Location Contig17604: 3844-22688
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21900g
description hypothetical protein
nr
ID KDP25138.1
description hypothetical protein JCGZ_22673 [Jatropha curcas]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID A0A067JQM4
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_22673 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017604_020 0.0 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
2 Hb_001699_050 0.1000356831 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
3 Hb_002276_100 0.1016630857 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
4 Hb_000808_160 0.1016788124 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
5 Hb_003556_070 0.1025014279 - - metal ion binding protein, putative [Ricinus communis]
6 Hb_004544_090 0.1106873774 - - cytochrome P450, putative [Ricinus communis]
7 Hb_009510_050 0.1115063102 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000819_010 0.1150117134 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
9 Hb_000280_110 0.1153806151 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_073119_010 0.1154410096 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
11 Hb_082870_010 0.1165650523 - - Disease resistance protein RFL1, putative [Ricinus communis]
12 Hb_000976_340 0.1176672559 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_003602_090 0.120735035 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
14 Hb_000522_130 0.1226324694 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
15 Hb_006615_180 0.1245360201 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
16 Hb_000098_250 0.1249689932 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
17 Hb_000094_010 0.1273254483 - - lrr receptor protein kinase, putative [Ricinus communis]
18 Hb_005784_020 0.1286209864 - - Protein MKS1, putative [Ricinus communis]
19 Hb_002324_050 0.133558134 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
20 Hb_001123_170 0.1339450362 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_017604_020 Hb_017604_020 Hb_001699_050 Hb_001699_050 Hb_017604_020--Hb_001699_050 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_000808_160 Hb_000808_160 Hb_017604_020--Hb_000808_160 Hb_003556_070 Hb_003556_070 Hb_017604_020--Hb_003556_070 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090 Hb_009510_050 Hb_009510_050 Hb_017604_020--Hb_009510_050 Hb_004032_250 Hb_004032_250 Hb_001699_050--Hb_004032_250 Hb_000007_160 Hb_000007_160 Hb_001699_050--Hb_000007_160 Hb_001699_050--Hb_000808_160 Hb_001699_050--Hb_009510_050 Hb_002324_050 Hb_002324_050 Hb_001699_050--Hb_002324_050 Hb_074312_020 Hb_074312_020 Hb_002276_100--Hb_074312_020 Hb_020285_010 Hb_020285_010 Hb_002276_100--Hb_020285_010 Hb_000280_110 Hb_000280_110 Hb_002276_100--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_002276_100--Hb_046101_010 Hb_038777_010 Hb_038777_010 Hb_002276_100--Hb_038777_010 Hb_001369_070 Hb_001369_070 Hb_002276_100--Hb_001369_070 Hb_002571_010 Hb_002571_010 Hb_000808_160--Hb_002571_010 Hb_000522_130 Hb_000522_130 Hb_000808_160--Hb_000522_130 Hb_000094_010 Hb_000094_010 Hb_000808_160--Hb_000094_010 Hb_000976_340 Hb_000976_340 Hb_000808_160--Hb_000976_340 Hb_073119_010 Hb_073119_010 Hb_003556_070--Hb_073119_010 Hb_000098_250 Hb_000098_250 Hb_003556_070--Hb_000098_250 Hb_000120_070 Hb_000120_070 Hb_003556_070--Hb_000120_070 Hb_003556_070--Hb_000280_110 Hb_000977_090 Hb_000977_090 Hb_003556_070--Hb_000977_090 Hb_001123_170 Hb_001123_170 Hb_004544_090--Hb_001123_170 Hb_000411_050 Hb_000411_050 Hb_004544_090--Hb_000411_050 Hb_004544_090--Hb_002276_100 Hb_004544_090--Hb_020285_010 Hb_006002_010 Hb_006002_010 Hb_004544_090--Hb_006002_010 Hb_007894_030 Hb_007894_030 Hb_004544_090--Hb_007894_030 Hb_003602_090 Hb_003602_090 Hb_009510_050--Hb_003602_090 Hb_006615_180 Hb_006615_180 Hb_009510_050--Hb_006615_180 Hb_082870_010 Hb_082870_010 Hb_009510_050--Hb_082870_010 Hb_117127_010 Hb_117127_010 Hb_009510_050--Hb_117127_010 Hb_000723_060 Hb_000723_060 Hb_009510_050--Hb_000723_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.873609 47.3349 11.9656 18.94 0.758852 1.73701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0689194 0.075929 0.14536 18.3912 8.57032

CAGE analysis