Hb_017651_010

Information

Type -
Description -
Location Contig17651: 6541-12001
Sequence    

Annotation

kegg
ID rcu:RCOM_0136880
description Ran GTPase binding protein, putative
nr
ID XP_002526126.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9SJF7
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0136880 PE=4 SV=1
Gene Ontology
ID GO:0004672
description chromosome condensation regulator family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16907: 9709-9840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017651_010 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_054649_020 0.2417747241 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
3 Hb_005715_020 0.298346831 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
4 Hb_000334_200 0.3024344794 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_000813_080 0.3025542569 - - caspase, putative [Ricinus communis]
6 Hb_050495_010 0.3084219466 - - heat-shock protein, putative [Ricinus communis]
7 Hb_097433_020 0.3136832789 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_001250_120 0.3192304094 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
9 Hb_001854_010 0.3222005549 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_000486_050 0.3256430633 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_000243_100 0.3301582083 - - Purple acid phosphatase precursor, putative [Ricinus communis]
12 Hb_004162_110 0.3301648823 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
13 Hb_002800_040 0.3302501515 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_167316_010 0.3386214038 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
15 Hb_011362_030 0.3409289338 - - polyprotein [Oryza australiensis]
16 Hb_012733_080 0.34369993 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_006183_010 0.3439714287 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000032_530 0.3442789533 - - -
19 Hb_080147_010 0.3443605271 - - -
20 Hb_000563_450 0.3455612939 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]

Gene co-expression network

sample Hb_017651_010 Hb_017651_010 Hb_054649_020 Hb_054649_020 Hb_017651_010--Hb_054649_020 Hb_005715_020 Hb_005715_020 Hb_017651_010--Hb_005715_020 Hb_000334_200 Hb_000334_200 Hb_017651_010--Hb_000334_200 Hb_000813_080 Hb_000813_080 Hb_017651_010--Hb_000813_080 Hb_050495_010 Hb_050495_010 Hb_017651_010--Hb_050495_010 Hb_097433_020 Hb_097433_020 Hb_017651_010--Hb_097433_020 Hb_054649_020--Hb_000813_080 Hb_001250_120 Hb_001250_120 Hb_054649_020--Hb_001250_120 Hb_167316_010 Hb_167316_010 Hb_054649_020--Hb_167316_010 Hb_000579_150 Hb_000579_150 Hb_054649_020--Hb_000579_150 Hb_054649_020--Hb_097433_020 Hb_007021_030 Hb_007021_030 Hb_005715_020--Hb_007021_030 Hb_018118_020 Hb_018118_020 Hb_005715_020--Hb_018118_020 Hb_010997_100 Hb_010997_100 Hb_005715_020--Hb_010997_100 Hb_004650_090 Hb_004650_090 Hb_005715_020--Hb_004650_090 Hb_005715_020--Hb_097433_020 Hb_001396_150 Hb_001396_150 Hb_005715_020--Hb_001396_150 Hb_000243_020 Hb_000243_020 Hb_000334_200--Hb_000243_020 Hb_181975_010 Hb_181975_010 Hb_000334_200--Hb_181975_010 Hb_002326_070 Hb_002326_070 Hb_000334_200--Hb_002326_070 Hb_000334_200--Hb_097433_020 Hb_002205_100 Hb_002205_100 Hb_000334_200--Hb_002205_100 Hb_001396_170 Hb_001396_170 Hb_000334_200--Hb_001396_170 Hb_001529_030 Hb_001529_030 Hb_000813_080--Hb_001529_030 Hb_127819_010 Hb_127819_010 Hb_000813_080--Hb_127819_010 Hb_022534_020 Hb_022534_020 Hb_000813_080--Hb_022534_020 Hb_125981_010 Hb_125981_010 Hb_000813_080--Hb_125981_010 Hb_007292_030 Hb_007292_030 Hb_000813_080--Hb_007292_030 Hb_050495_010--Hb_167316_010 Hb_189237_010 Hb_189237_010 Hb_050495_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_050495_010--Hb_144951_010 Hb_116685_010 Hb_116685_010 Hb_050495_010--Hb_116685_010 Hb_001565_120 Hb_001565_120 Hb_050495_010--Hb_001565_120 Hb_004108_010 Hb_004108_010 Hb_050495_010--Hb_004108_010 Hb_057217_010 Hb_057217_010 Hb_097433_020--Hb_057217_010 Hb_002737_020 Hb_002737_020 Hb_097433_020--Hb_002737_020 Hb_097433_020--Hb_018118_020 Hb_097433_020--Hb_050495_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0936785 0.535948 0 0.0139945 0 0.317856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0306314 0 0 0.0635125

CAGE analysis